Camelina sativa (false flax): 104756448
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Entry
104756448 CDS
T05044
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42 isoform X2
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104756448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104756448
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104756448
Spliceosome [BR:
csat03041
]
Complex A
U2 snRNP components
U2 related factors
104756448
Complex B
104756448
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
FeoA
Motif
Other DBs
NCBI-GeneID:
104756448
NCBI-ProteinID:
XP_010477348
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All DBs
Position
17:9750198..9756067
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AA seq
1176 aa
AA seq
DB search
MEVEKSKYRSEDMDVEEEDDLKMNRRDRDRSKERKKDKGSEKSREKDRRKRRSERVKSSD
SEDDYGRDDDDDEEREKRKEKERERRRRDKERAKRRSERRKSSDSDEDDEEDDERDNKRR
SKERERGHREHERDRGKDRKRDRDREREERKEKEREREKDRERREREREEREKERVKERE
RREREDVERDRREREKERGSRRNRERERSREVGNEESDDDVKRDLKRRRRDSGERKEKER
EKSVGRSSRHADGNGDSPRRKSVEEDGEKKEKKTREEELEDEQKKLDEEVEKRRRRVQEW
QELKRKKEEAESDSKGDADGEEPKAGKAWTLEGESDDEEGHPDEKSETEMDVDGDTNPEN
GGDAKMVDLENETATTVPESGGDGAADEEEIDPLDAFMNTMVLPEVEKLSNSAPPPPVND
GILDSKMNGKESGDQPKRGFNKALGRIIQGEDSDSDYSEPKDDDDPSLDEDDEEFMKRVK
KTKAEKLSLVDHSKIEYEPFRKNFYIEVKDISRMTQEEVNAYRKELELKVHGKDVPRPIK
SWHQTGLTTKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLR
HIKDQPPVEAGEGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISEL
KRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRP
ERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPESDRFFRLLEL
LGEWYEKGKILIFVQSQEKCDALFKDMIRQGYPCLSLHGGKDQTDRESTISDFKSNVCNL
LIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAP
DLVKALELSEQPVPADLKAIADGFMAKVKQGIEQAHGTGYGGSGFKFNEEEEEVRKAAKK
AQAKEYGFEEDKSDSEDENDVVRKAGGGEISQQQATFAQIAAIAAAARAAIPVTAPVTAN
QLLSNGGGLHAVPGVLPLNNVSGHPSDGAGRAAAMVAAMNLQHNLAKIQADAMPEHYEAE
LEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFYPQGRIPGPGERKLYLFIEGPSE
KSVKTAKVELKRVLEDITNQAMSLPGGAQPGKYSVI
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggaggtagagaaatctaagtacaggagcgaagatatggatgtagaggaggaggatgat
ttgaagatgaatcggcgagatcgtgatcggagtaaggagcggaagaaggataagggttcg
gagaagagccgggagaaggatagacggaagagacggtctgagagagttaagagtagtgat
tctgaagatgattacggtagagatgatgatgatgatgaagagagggagaagcgtaaagag
aaggagagggagcggagacggagggataaggagagggctaagagacggtctgagagaagg
aagagtagtgattctgatgaggacgatgaagaagatgatgagagggataataaacgcaga
tccaaggagagggagagaggacatcgagaacatgagagagatagaggcaaagatcgtaaa
agggatagagatagagagagggaggagagaaaggagaaggaaagagaaagggagaaggat
agagagagaagggaacgggaacgagaagagcgggagaaggagagagtgaaagaaagagag
aggcgggaacgggaagatgttgagagggataggagagagcgtgagaaagaaaggggtagt
aggaggaaccgggaaagggaaaggtcacgagaggttggcaatgaagagagtgatgatgat
gtcaagcgtgacttgaagcgtagaagaagagatagcggagaacggaaggagaaagagcgt
gaaaagagtgttggtagatccagcaggcatgcagatggcaacggagatagtccaaggaga
aagagtgtcgaggaggatggtgaaaagaaagagaagaaaacccgagaagaagaactagag
gatgagcagaagaagttggatgaggaggtggaaaaacggaggagaagagtccaggagtgg
caagaattgaagagaaaaaaggaggaagctgaaagtgatagtaagggtgatgcagatggt
gaagagcctaaggccggtaaggcttggactcttgaaggagaatctgatgatgaagaaggt
catccggatgaaaaatcagaaacagaaatggatgttgatggagacactaatcctgaaaat
ggtggagatgccaagatggtagacttggagaatgagacagctactactgtccctgagagt
ggaggtgacggagctgcagacgaagaggagattgatcctttggatgcttttatgaatact
atggtattaccagaggttgagaagcttagcaacagtgctcctcccccaccagtgaatgat
ggtattttggattctaaaatgaatgggaaggaaagtggtgaccagccaaagagaggtttt
aataaggcccttggtaggataattcaaggtgaagattctgattctgattattcagaacca
aaggatgatgatgatccaagtttagatgaagacgatgaggagttcatgaagagagttaag
aagacaaaagcagagaaattgtcccttgttgaccattcaaaaatagagtatgaacctttc
cggaaaaacttctatatcgaagtgaaggatatatctaggatgacacaagaagaagttaac
gcttacagaaaggaattggagctgaaagttcatggaaaagatgttccaagacccattaag
tcttggcaccagactgggctaaccaccaaaattttggatactatgaagaagcttaattat
gaaaagccaatgcctattcaaacacaagcactccctatcatcatgagtggtcgagactgc
attggggttgcaaaaaccgggtcaggtaaaacccttggttttgttttgccaatgctgagg
catattaaagatcagcctcccgttgaggctggtgaagggccaattgggcttgtaatggca
cctactagggagcttgttcagcagattcacagtgatatcagaaagttttctaagccattg
ggtataagatgtgtacctgtctatggaggatcaggagttgcccagcaaattagtgagctt
aagcgaggtactgagattgttgtgtgcactcccggcagaatgattgatatcctttgtaca
agcagtggaaaaatcaccaatctgcgaagggtcacatttttggtaatggatgaagctgat
cgtatgtttgacatgggttttgagccccaaattactcgtattattcagaacattcgacct
gaacgtcaaactgtgctcttttctgccacttttcctcgccaagttgaaactttggcacgt
aaagttttgaacaagcctgtagaaattcaggttggtggaaggagtgttgtgaataaagat
atagctcagttagttgaagtcagaccggagagtgataggttctttagacttctggaactt
cttggggaatggtatgagaaaggaaaaattctgatcttcgtgcagtcgcaggaaaagtgt
gatgccttgtttaaggatatgatcagacaaggttatccgtgtctatctcttcacggcggt
aaggatcagactgatcgtgaatcaactatatctgatttcaagagcaatgtatgtaatttg
ttgattgccacaagtgttgcggctaggggtctagatgtgaaagagcttgagttggttgta
aactttgatgcaccgaaccactatgaagactatgtacatcgcgttggcaggacaggcagg
gcagggcggaaaggctgcgctgtgacatttatctctgaggatgatgcgaaatatgcacca
gatttggtcaaggccctggaactttctgagcagccagtgcctgctgatctgaaagcaatt
gctgatggtttcatggcgaaagtgaaacagggtattgagcaagctcatggaactggctat
ggtggtagtggctttaaatttaacgaagaggaggaagaagttaggaaagcagcaaagaaa
gcacaagcgaaggagtatggctttgaggaagacaagtctgactcagaagatgagaatgat
gttgtaagaaaggcaggtggtggtgagatttcacagcagcaggctacttttgctcagata
gccgccattgctgctgctgccagagctgctattcccgtgactgctcctgtgactgctaat
cagttactgtcaaatggtggcgggcttcacgccgtgccaggtgtccttccacttaataat
gtttctggccatcctagtgatggggcaggccgtgctgcagccatggttgctgccatgaat
ttgcagcataacctagcaaagattcaagctgatgcaatgcctgaacactatgaagcagaa
ctcgagatcaatgatttcccacagaatgctcgctggaaggtcacccacaaggaaactttg
ggtccaatatcagagtggactggagccgccattaccactagaggtcagttttatccgcaa
ggacgaatccctggacctggggaacgcaaactctacttgttcattgaagggccttctgaa
aaatctgttaagacagcaaaggttgaactcaagcgtgttcttgaagacattacaaatcag
gccatgtcacttcctggcggagcacaacccggcaaatactcggtgatataa
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