Camelina sativa (false flax): 104756452
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Entry
104756452 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104756452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104756452
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104756452
Spliceosome [BR:
csat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104756452
Complex C
U5 SnRNP specific factors
104756452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_11
DUF1493
Nis1
Motif
Other DBs
NCBI-GeneID:
104756452
NCBI-ProteinID:
XP_019094878
UniProt:
A0ABM1R790
LinkDB
All DBs
Position
17:complement(9770020..9779460)
Genome browser
AA seq
2170 aa
AA seq
DB search
MANLGGGAEAHARFKQYEYRANSSLVLTTDNRPRDTHEPTGEPETLYGRIDPRTFGDRVA
RGRPQELEDKLKKSKKKERDVVDDTANVRQSKRRRLREESVLTDTDDAVYQPKTKETRAA
YEAMLSLIQQQLGGQPLNIVSGAADEILAVLKNETFKNPEKKMEIEKLLNKIKDQEFDQL
VSIGKLITDFQEGGDSGGGKANDDEGLDDDLGVAVEFEENEEDDEDSDPDMVQEEDDEED
EEPTRTGGMQVGAGLNDDDAGDANEGTNLNVQDIDAYWLQRKISQAYEQQIDPQQCQVLA
EELLKILAEGDDRDVENKLLVHLQFDKFSLVKFLLRNRLKVVWCTRLARAEDQEERNRIE
EEMRGLGPELTAIVEQLHATRATAKEREENLQKSINEEARRLRDETGGDGGRGRRDVADR
DLESGWVKGQRQMLDLESLAFDQGGLLMANKKCDLPPGSYRSHGKGYDEVHVPWVSKKVD
INEKLVKITEMPGWAQPAFKGMKQLNRVQSKVYETALFTAENILLCAPTGAGKTNVAMLT
ILQQLEMNRNEDGTYNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVTVRELSGDQSLT
GKEIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIVARTL
RQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIGISVKK
PLQRFQLMNDLCYQKVLAGAGKHQVLIFVHSRKETAKTARAIRDTAMANDTVSRFLKEDS
VSREVLQSQVEIVKNNELKDILPYGFAIHHAGLTRSDREIVEDLFAQGHVQVLVSTATLA
WGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITGYSEL
QYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRNPTLY
GLAPDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHG
TIATYNEHLKPTMGDIDLYRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKETLEEPS
AKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKALNLSK
MVGKRTWSVQTPLRQFHGIPNEILMSLERKDLVWERYYDLSAQELGELIRSPKMGRPLHK
FIHQFPKLTLSAHVQPITRTVLKVELTVTPDFLWDEKIHKYVEPFWIIVEDNDGEKILHH
EYFILKKQYVDEDHTLSFTVPIFEPLPPQYFVRVVSDKWLGSQTVLPVSFRHLILPEKYP
PPTELLDLQPLPVTALRNPNYERLYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPTGSGKT
ICAEFAILRNHQEGPATMRVVYIAPLEAIAKEQFRIWEKKFGKGLGLRVVELTGETALDL
KLLEKGQIIISTPEKWDALSRRWKQRKFVQQVSLFIVDELHLIGGLGGPVLEVIVSRMRY
ISSQVNNKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGVDISSFE
ARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPDFLLGNL
EELDPFVSQIREETLKETLRHGIGYLHEGLSSLDQEIVTQLFEAGRIQACVMSSSLCWGT
PLSAHLVVVMGTQYYDGRENSHSDYPVHDLLQMMGRASRPLLDNAGKCVIFCHAPQKEYY
KKFLYEAFPVESNLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNLQ
GVSHRHLSDHLSELVENTLSNLEASKCIEIEDEMELSPLNLGMIASYYYISYTTIERFSS
LLSSKTKMKGLLEILTSASEYDMIPIRPGEEETVRRLINHQRFSFENPKCTDPHVKANAL
LQAHFSRQNIGGNLAMDQRDVLLSATRLLQAMVDVISSNGWLNLALLAMEVSQMVTQGMW
ERDSMLLQLPHFTKDLAKRCQENPGRNIETVFDLVEMEDEERQELLSMSDVQLLDIARFC
NRFPNIDLTYEVVDSEEVTPGKEVTLQVMVERDMEGRTEVGAVDSLRYPKTKEEGWWLVV
GDTKTNQLLAIKRVSLQRKAKVKLDFTVPTEPGEKSYTLYFMCDSYLGCDQEYSFSVDVK
GAGAGDHMEE
NT seq
6513 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacttgggaggcggtgcggaagcacatgccaggttcaagcagtacgagtacaga
gccaactctagtctggtgttaaccactgataatcgtcctcgggatacacatgagcctaca
ggagaaccggaaactctgtatgggagaattgatccgaggacttttggtgaccgtgttgct
aggggaaggcctcaggagctggaggataagcttaagaagtctaagaagaaggaacgcgat
gttgtagatgatactgctaatgttcggcagagtaagaggcgtcgtcttagggaagagagc
gtgcttactgatactgatgatgcggtttatcagcccaagactaaggagacgagggctgcg
tatgaggccatgcttagtcttattcagcagcagttgggtgggcaacctcttaatattgtt
agtggtgctgcggatgagattttggccgtcctcaagaacgaaacattcaaaaaccctgag
aaaaagatggagatcgagaagttgctcaacaaaattaaagaccaggagtttgatcagctt
gttagcattgggaagttgatcactgattttcaagagggtggtgattctggtggtggtaag
gcgaatgacgatgaggggcttgatgatgatttgggcgtcgctgttgaatttgaggagaat
gaagaagatgatgaggatagtgatcctgatatggttcaagaggaagatgatgaggaggat
gaagagcctaccagaactggaggtatgcaggttggtgcaggattaaatgacgatgatgca
ggagatgcaaatgagggcacaaatcttaatgttcaagacatagatgcatattggctccag
agaaagatatctcaagcatatgaacagcagattgatccacaacaatgccaagtactcgca
gaagagcttcttaagatactcgctgaaggagatgatagggatgttgagaacaagctgctt
gtgcaccttcagtttgacaagtttagccttgttaaatttctgctgcggaaccgtcttaaa
gttgtgtggtgcactcggttggctagggcagaagaccaagaagagaggaatcgaattgag
gaggagatgagggggttgggcccagagttgacagcaattgtggagcagctgcacgcaaca
agagcaacagcgaaagagagggaggagaatctgcaaaaaagtattaacgaagaagctcga
cgtttgagggatgaaactggtggagatggaggcagaggcaggagagatgttgctgataga
gatttagagagtggttgggtgaagggtcagcgtcagatgctggacttggagagtttggct
tttgaccaaggtggtctcctgatggcgaataagaagtgtgacctccctcctggctcttac
agaagtcatggcaaaggatatgatgaagtccatgtgccatgggtttctaaaaaggtggat
atcaatgagaagcttgtgaagattaccgaaatgcctggctgggcccaacctgctttcaag
ggaatgaaacagttgaacagggttcaaagcaaagtgtatgagactgcactttttacggca
gagaacattcttctttgtgctccgactggtgctgggaagaccaatgttgctatgcttacg
atacttcagcaacttgaaatgaataggaatgaagatggaacttataaccatggagattat
aaaattgtctatgttgcacccatgaaagctcttgttgctgaagttgtaggtaatttgtct
aatcgtctgaaggattatggagttactgtgagagaactcagtggggatcagtccctaacc
gggaaagaaattgaagagactcagataattgttacaacaccagagaagtgggatatcatc
actaggaagtctggagatcgaacttatactcagcttgtgagacttcttataatcgatgaa
attcatctccttcatgataatcgaggtcctgtgcttgaaagcattgttgctaggactctt
aggcaaattgaaaccacgaaagagaatattcgtctggtgggtttatctgctacactgcca
aattatgaagacgtggccttatttttgcgggttgatcttaagaaaggtttgtttaaattt
gaccgcagctacagacccgtgcctctccatcagcagtatattggaatcagtgtgaaaaaa
ccgttgcagcggttccaactgatgaatgatctgtgttatcagaaagtattggctggtgct
ggaaagcaccaggtccttatttttgttcattcgaggaaggaaacagcaaaaactgcaaga
gcaatacgggacacggcaatggcgaacgataccgtcagcagattcttgaaagaagatagt
gtaagtcgtgaagttcttcagagtcaggttgagattgttaagaataatgagctgaaagat
attctgccatacggttttgcaattcatcatgctgggttaacaaggagtgatcgtgagatt
gttgaagatctttttgctcaggggcatgtgcaagtcctggtttccacagcaactctcgca
tggggtgtgaatctgcctgcacatacagttattataaaaggaacccaagtgtataatcct
gagaaaggggcgtggatggagttgagtcctctagatgtaatgcagatgcttggccgtgct
ggaagacctcagtatgatcaacatggggagggtataattatcactggctacagcgagctg
cagtattatctttctttgatgaatgagcaactacctattgaaagccagtttatttctaaa
cttgctgatcagcttaatgctgaaattgtgcttggaaccgttcagaatgctagagaggct
tgccattggcttggttatacgtatttatatatccgtatggttcgtaatccaacgctgtat
ggcttagcgcctgatgctcttgcaaaagacgtagtgttggaggaaagaagagctgacctg
atacattcggctgctaccatcttggacaaaaacaacttggttaagtatgacaggaaaagt
gggtacttccaagttacagatttgggacggattgctagctactattacataacccatggg
acaatagctacgtacaatgagcatttgaagccaacaatgggtgatatagatctctatcgt
ctgttctcactgagtgaggagttcaagtatgtgactgttcggcaagatgaaaagatggaa
ctggcgaaacttttggatcgtgtcccgattccgatcaaggaaactttggaggagcccagt
gcaaagataaatgtattgctgcaggcatatatttcacagctaaagcttgagggtctttct
ttgacatctgacatggtctacattactcagagtgctggacgtcttgtgcgagctctttac
gaaattgtattgaagcggggatgggctcaactggcagagaaggctctgaacttgtctaaa
atggttgggaagaggacgtggagtgtacagacaccccttcgtcagtttcatggaattccc
aatgagattttgatgagcttggagaggaaggatttggtgtgggagagatactatgatcta
tccgcacaggagctaggagagcttattcgtagtcctaagatgggcaggccgcttcacaag
ttcatccaccagttcccaaaactgactctttctgcacatgttcagcctataactcgcact
gttctgaaggtggagctcacagttacacctgatttcttgtgggacgagaaaattcataaa
tatgttgagccgttctggataattgtggaagacaatgatggtgaaaagatccttcatcac
gagtattttattttgaagaagcagtatgttgatgaggatcacactttgagcttcactgtg
ccaatctttgaaccactaccacctcagtattttgtccgagtggtttcagacaagtggctt
ggctcgcagactgtgttgcctgtatctttcaggcatcttattcttccagaaaagtatcca
cctccgacggaactactggacttgcagcccctcccagtgacggcgctaagaaatccaaat
tatgagaggctctatcaggatttcaagcattttaatccagtgcagacccaggtctttact
gttttgtataacacaaacgacaatgtgttggttgctgctccaacgggaagtggtaaaact
atttgtgcggagtttgctattttaaggaatcatcaagaagggcctgctacaatgcgtgtt
gtttatattgcgccgcttgaggctattgccaaggagcagtttcgtatctgggagaagaag
tttgggaagggtcttggtttacgggttgttgagctaactggggagactgcattggatctt
aagctgcttgagaaaggtcagataatcataagtactcctgagaaatgggatgctctttcc
cgcaggtggaaacagagaaaattcgtacaacaggttagccttttcattgtcgacgaactc
catctaattggaggtctaggtggtccagtgttggaggtaatcgtctccagaatgagatat
atttcaagtcaggtcaataacaagatcaggattgttgcgttatccacttcccttgcaaat
gcgaaggatcttggggagtggattggggccagttcccacggccttttcaacttccctccg
ggagtccgtcctgttcctctggagattcacattcagggagtggatatatctagttttgaa
gccaggatgcaggcgatgaccaagccaacctacactgccatagtccagcacgccaagaac
aagaagccggctattgttttcgtcccaacccgtaaacatgtccgcttgactgctgtggat
ctgatggcttattctcacatggataacccgcagagtcctgactttctgttagggaatctg
gaagaactggacccttttgttagccaaatccgcgaggaaacactgaaggagacactgcgc
catggtattgggtacttgcatgagggtttaagcagtctggatcaggagattgtgacacag
ctctttgaagctggacggatacaggcttgtgtgatgagcagttcattgtgttggggcact
ccattatctgcgcatttggtggtcgtaatggggacacagtattacgatgggagggaaaat
tcacattctgattatcccgtccatgatctgcttcagatgatggggcgtgctagccgacct
cttcttgacaatgccgggaagtgtgtgatcttttgtcacgcaccgcagaaggagtattac
aagaaatttttgtacgaagccttccctgtggaaagtaatctccagcatttcttgcatgat
aatttcaacgcagaagtggttgctggggttatagaaaacaagcaagatgccgtggattat
cttacatggactttcatgtacaggaggcttccccagaacccgaactactacaatctccaa
ggtgttagccacaggcatttgtctgatcacctatcagagctggttgagaacaccttgtct
aatcttgaagccagtaaatgcattgagatagaggatgagatggaactctctcctcttaac
cttggtatgattgcatcctattattacatcagttataccaccattgagcgcttcagttct
ctgttgtcatctaaaaccaagatgaagggtcttcttgagatcttgacatcagcttcggag
tatgacatgatccctatacggcctggcgaagaggagactgttcggagactaatcaatcac
cagaggttctcttttgaaaacccaaaatgcacagaccctcatgtgaaggcaaacgcgctt
ctccaggcgcatttctcaaggcaaaacattggcgggaacttggcaatggatcagcgtgat
gtccttttatctgcaactagacttcttcaagctatggtcgatgtgatatcaagcaatggc
tggctgaatcttgctctgctagctatggaagtaagccagatggtgactcaaggcatgtgg
gagcgggactccatgcttctgcagctccctcactttacaaaggacttggccaagaggtgc
caggagaacccggggagaaacattgaaaccgtatttgatcttgtggagatggaggacgaa
gaacgccaagagcttctcagtatgtcagacgtgcagcttctagacattgccagattctgc
aaccgcttcccaaacatcgaccttacctacgaggttgtggacagtgaagaggtgacccca
gggaaagaggttacattgcaagtgatggttgagagagacatggaggggaggacagaagtg
ggagctgtggattcactcaggtatcccaagaccaaagaagaaggatggtggctggtcgtg
ggagacaccaagacgaatcagttgctggcaatcaagcgtgtctcattgcaacggaaagcg
aaggtgaagctggatttcacggtaccgacagaaccaggagagaagtcatacacactatac
ttcatgtgcgactcttacttgggttgtgaccaagagtactctttctctgttgatgtcaaa
ggagctggcgctggagatcacatggaagaatga
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integrated database retrieval system
