Camelina sativa (false flax): 104756905
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Entry
104756905 CDS
T05044
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104756905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104756905
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104756905
Spliceosome [BR:
csat03041
]
Complex C
Other components
Step II factors
104756905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
HA2_N
AAA_30
nSTAND3
ResIII
DUF2532
PhoH
AAA_16
ATPase
ABC_tran
T2SSE
TsaE
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
104756905
NCBI-ProteinID:
XP_010477862
LinkDB
All DBs
Position
17:12620525..12624546
Genome browser
AA seq
709 aa
AA seq
DB search
MPSMAQGEPRSSVQNSKPNFSMRQKIAEHRKSLPIASVEKRLIEEVRKNDILIIVGETGS
GKTTQLPQFLYNAGFCREGKMIGITQPRRIAAVTVAKRVAEECDVQLGQKVGYSIRFDDT
TSNVTRLKYMTDGLLLREALLDPHLSRYSVIIVDEAHDRSVHTDVLLALLKKIQRARLKP
VGEKTEIGNMALQGQTKTRDENGPQQNGVLRGCQGRKLSPLKLIIMSASLDARVFSEYYG
GAKAVHVQGRQFPVDILYTVHPESDYIDAALVTIFQIHMEEKPGDILVFLTGQDEIESVE
RLVQERLQHLPEDKRKLLPIPIFSALPSEQQMKAFAVAPPGFRKVILATNIAETSITIPG
IRYVIDPGFVKARTYDPRKGMESLDVVPASKAQTLQRSGRAGREVPGKCFRLYQEREFEK
LEDSTKPEIKRCNLSNIILQLKALGIEDIIGFDFIDKPSSGAIVKALAELHSLGALTDDG
KLEDPAGYQMSRLPLEPIYSKALILANQFNCLEEMLITVAVLTVESIFYDPREKREEART
ARNHFASVEGDHLTYLSVYRESDEFLEKKKVAGSGNNLDKIMKKWCKENFVNSRSLKHAR
DIYRQIREHVEQMGFNVSSCGNDMLEFRRCLAASFFLKAAQRQLDGTYRALESGEIVHIH
PTSVLFRAKPECVIFDELMQTSKKYIKNLTRIDPLWLAELAPHHYKTAE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaatggcgcaaggagaacctcggagctctgtacaaaacagcaaaccgaacttc
agcatgaggcaaaaaatagcagaacatagaaagtctcttcctattgcttcagtggagaaa
cgtttgattgaggaggttcgaaagaatgatattttgattattgttggtgaaaccggtagt
gggaaaactactcaattgcctcagttcctatacaatgctggattctgtcgagagggaaag
atgatagggataacacaaccgagacgtatcgctgctgtgactgttgctaaaagggtagct
gaagaatgtgatgttcagttaggccaaaaggttggctattccattaggtttgatgatact
acttctaatgttactaggttgaaatacatgacagatggattgttgctgagggaagcgctg
ttggatcctcatctttctagatattcagttattattgtcgatgaagctcatgacaggagt
gttcatactgatgttctgctggccttgctgaaaaaaatacagcgggctcggttgaagcct
gttggtgagaaaactgagattggtaatatggcattacaagggcagacaaaaacaagggat
gagaatggtcctcagcagaatggtgtattaagaggttgtcaaggtagaaaattatctccg
ttgaagctgatcattatgtctgctagtttggatgcacgtgttttctctgagtattacggt
ggtgccaaagctgttcatgtgcaagggcgacaatttcctgttgacattctttacactgtt
catcctgaatctgattatatagatgctgccttggtcaccatatttcagattcatatggag
gagaagccaggtgacatacttgttttcctcactgggcaagatgaaatcgaatctgttgag
agacttgtccaagaaagacttcagcatttacctgaagacaaacgaaagctactgccaatt
cctatcttttctgctcttccatcagagcagcaaatgaaagcttttgctgtagctccgcct
ggttttcgcaaggtgattttggccacgaatatagcagagacatcaattacaattcctgga
ataagatacgttatagaccctgggtttgttaaggcacgaacctatgatccaaggaaaggc
atggaatcacttgatgttgttccagcatcaaaagcacagacgcttcaaagaagtggacgc
gcaggacgtgaggttcctgggaagtgctttcgtctttatcaggagagggaatttgagaaa
ctggaagactcaactaaaccagagatcaagagatgcaacctctcaaatatcattttgcag
ctgaaggctctgggaattgaggatataattggatttgattttatagataaaccttcaagt
ggtgcgattgtaaaagcattggcagagttgcactcgcttggtgccttgacggatgatggt
aaactagaagatcccgctggctaccaaatgtcacggctcccactggaacctatttactcc
aaagctctaattttggccaatcaattcaactgtcttgaggaaatgctgatcactgttgcc
gtgctcactgtggagtccatattttatgatccgcgtgagaagagagaagaggcaagaaca
gcaagaaaccacttcgctagcgttgaaggggatcacctaacttatcttagtgtttaccgg
gagtcagatgagttcttggaaaagaaaaaagtagccggcagtggaaacaatcttgataaa
attatgaaaaaatggtgtaaggagaactttgtgaatagccgttccttgaagcatgctcgt
gacatatataggcaaattcgtgaacatgttgaacagatggggtttaatgtgtcttcatgc
ggtaatgacatgcttgagtttcgtagatgtcttgctgcatcgtttttccttaaagcagca
cagagacaattggacggtacatacagggctttggaaagtggtgagattgtccacatccac
ccaacttctgttttattccgtgcgaaacctgaatgtgttatattcgacgagctcatgcaa
accagcaagaagtacatcaagaacctcacaagaattgatcccttatggttggctgagtta
gctcctcatcattacaaaacagcagagtga
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