Camelina sativa (false flax): 104757117
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Entry
104757117 CDS
T05044
Name
(RefSeq) putative CCR4-associated factor 1 homolog 3
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104757117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104757117
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104757117
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104757117
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
WIT1_2_N
Motif
Other DBs
NCBI-GeneID:
104757117
NCBI-ProteinID:
XP_010478138
UniProt:
A0ABM0WYV5
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Position
17:complement(13813221..13814206)
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AA seq
288 aa
AA seq
DB search
MKQSRGGEVWRWNKEVEMDAIRDCLRNSCFIAVDTEFPGCLLETPIEACEQIRYRDMKYN
VDNTNLIQLGFTFLDGNGDTRGTWEVNFSDFDESVNAYNEKSIAFLKSNGLNLDKIREEG
IGIDEFFREFAQILKTKRMSWVTFQGSYDKAYLVKGLTGGEPLPKTSQGFEVAVQTLLGD
VFDVKKIAELCSGISSHYGLQKIADALQMRRVGIAHHAGSDSELTARIFTTMACGLHDYE
KRKQQYQDQLMMSTSYVPQLPPRTIPMEYDAYPSSYGGYFSGAGQGMN
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaagtcgtggtggtgaagtttggagatggaacaaggaagtagagatggatgcc
ataagagattgtttgagaaacagttgtttcatcgctgtagatacagagtttcccggatgc
ttgttggagactcccatagaagcgtgcgagcaaatccggtacagagacatgaaatataac
gtcgacaataccaatctgattcaattagggtttacgttcttggacggtaacggagatacc
cgtggaacatgggaagttaatttctctgatttcgacgaatcagttaacgcttacaacgag
aaatctatcgcgtttctgaaaagtaatggtctcaatctggacaagatacgtgaggaagga
atcgggattgatgagttcttccgagagtttgctcagattcttaagacgaaaagaatgagt
tgggttacttttcaaggctcatacgacaaggcttatctagtgaaaggcttaaccggagga
gaaccgttgcctaagacttcccaaggttttgaggtggctgtgcagacgcttctgggagat
gtttttgatgtcaagaaaatagctgagttatgcagcgggataagtagccattacggacta
cagaagatagcagatgcgttacagatgaggcgtgtcggaatagctcatcacgctggttct
gacagcgaactcacggctcgtatcttcaccacgatggcttgcgggttgcatgattacgaa
aagagaaagcagcaataccaagatcagcttatgatgtctacaagttatgtaccacagctg
ccacccagaaccatacccatggagtatgatgcttacccgtcgtcttatggtggttacttc
agtggcgccggccaaggaatgaactaa
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