Camelina sativa (false flax): 104757972
Help
Entry
104757972 CDS
T05044
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104757972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104757972
Spliceosome [BR:
csat03041
]
Complex A
U1 snRNP components
U1 related factors
104757972
Complex B
104757972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF1707
Motif
Other DBs
NCBI-GeneID:
104757972
NCBI-ProteinID:
XP_010479063
LinkDB
All DBs
Position
17:24973298..24981412
Genome browser
AA seq
968 aa
AA seq
DB search
MSNNPPPSSGAQQFRPMVPGQQGQHFVPAASQPFHPYVHVPPNAQSQPPQFSQPIQQQQQ
LFPVRPGQPGHITSSSQAVSVPYIQTNQILTSGSTQQQPNAPPLTGFVTSGPPFSSSYTF
GPSTFPQQQPPPSLVQPNSQMHAAGVPPAANAWPVPVNQSTSLVSPVQQTGQQTPVAHST
DPGSSTPQSASDWQEHTSADGRKYYYNKQTKQSSWEKPLELMTPLERADASTVWKEFTTA
DGKKYYYNKVTKESKWTIPEDLKLAREQAQLASEKRSLSEAGSTPLSHNVASSSDPTVSS
ATSVAPSTSSTLPGHSSSPIQAGLAVPVTRPPSVAPVTPTSAAATDTEATAIKADNLPSR
GANDSNNGATAQNNEADNKEMSVNGKANLSPAGDKANVEEPMVYATKQEAKAAFKSLLES
VNVHSDWTWEQTLKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRRRQKKAREE
FVKMLEECEELSSSIKWSKAMSLFENDERFKAVDRSRDREDLFDNYIVELERKERNKAQE
EHRQHMAEYRKFLETCDFIKAGTQWRKVQDRLEDDERFCLEKIDRLIGFEEYILELEKEE
EELKKVEKEHVRRAERKNRDAFRTLLEEHVAAGTLTAKTYWLDYCIELKELPQYQAVASN
TSGSTPKDLFEDVTEELEKQYHEDKSRVKEAMKSRKISMVFSWLFEDFKSAILEDLSPQP
VSDINLKLIYDDLVERMKEKEEKEARKLQRMAEEFTNLLRTLKEITAASNWEDTKPLIEE
SQEYRSIGDESASRGLFEEYITSLQEKAKEKERKRDEEKVRKEKERDEKEKRKDKDKERR
EKEREREKERGKERSKREESDGETAVEASEGHKEEKRKGKDRDRKHRRRHHNSDEDVSSD
RDDREESKKSSRKHGNDRKKSRKHANSPESDSENRHKRQMKEQREGGRRSGYDELEDGEV
GEDGEIRH
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaataatcctcccccgtcttctggtgcccagcagtttcggccgatggttcctggg
cagcagggtcagcattttgttcctgcagcttcacagccttttcatccctatgtacatgta
cctccaaatgctcagagtcagcctccacagttttctcagcccatacagcagcagcagcag
ctctttccagtgagaccaggtcagcctggtcatattacatcatcgtcacaggctgtatca
gttccttatattcaaacaaaccagattctcacttctggatctactcaacaacagccaaat
gcacctccactgacgggctttgttacatctggacctccattttcttcttcatatactttt
ggaccatcaacttttcctcagcaacaaccaccaccatcattggtccaaccaaattctcag
atgcatgcagccggcgtccctccagcagcaaacgcttggcctgttcctgtaaatcaaagt
acatcacttgtttcccctgtgcagcagactgggcaacaaacaccagtcgcacattccaca
gacccaggaagctcgactccacaatctgcatctgactggcaggagcatacatctgctgat
gggagaaagtattattacaacaagcagactaaacaatcaagctgggagaaacctcttgaa
ctgatgacaccacttgagcgggcagatgcatccactgtatggaaggaatttacaacagct
gatggaaagaaatattattataacaaggttacaaaggagtctaagtggacaattccagaa
gatttgaagttagcacgggaacaagcccaactagctagtgaaaagaggtccctttccgaa
gctggatctactcctctgtcccacaatgttgcatcctcatctgatccaacggttagctct
gcgacctctgttgctcccagcacatcttcaacacttcctggacattcttcaagccctatc
caagcgggtttggctgtacctgtcacccgtcctccctcagttgctcctgttactccaacg
tctgctgcagctactgatactgaggctactgcaataaaagcagataatttaccgtctcgg
ggggcaaatgattcaaataatggagctacagcacaaaacaacgaggctgacaataaggaa
atgtcggtgaatggaaaagcaaatctgtcacctgcaggcgacaaagcaaatgttgaggaa
cctatggtatatgctactaagcaggaggctaaagctgctttcaagtctcttttggaatct
gtaaatgttcattctgactggacatgggaacagacattgaaagagattgttcacgacaaa
aggtatggtgctttgaggactctaggtgagcggaaacaagcttttaacgagtatcttggt
caaaggaaaaaagtggaagctgaagaaagacgaagaagacagaagaaagctcgggaagaa
tttgtcaagatgctagaggagtgtgaagagctttcatcatccataaaatggagcaaagca
atgagtttgtttgaaaatgatgagcgctttaaagctgttgaccgttcaagggatcgtgaa
gatctttttgacaattatattgtggaacttgagaggaaggaaagaaataaggcacaggag
gaacatcggcaacatatggctgagtatcggaagtttcttgaaacctgtgactttatcaaa
gctggtacacaatggcgcaaagttcaagatagactggaggatgatgaaagattctgtctt
gaaaagatagatcgcctgattggttttgaggaatacattcttgaactagagaaggaagaa
gaggagctgaagaaagtagagaaagaacatgtaaggcgggccgagagaaaaaaccgtgat
gcatttcgtacactattggaagaacatgttgctgctggtacccttacagccaagacgtac
tggttggattattgcattgagttaaaggagttgccccaataccaagctgttgcatctaat
acgtctggctcaactccgaaagacttgttcgaagatgtcacagaagagttagagaaacag
tatcatgaggataagagtcgcgtaaaggaagctatgaaatcaagaaagatttccatggtc
ttctcttggctgtttgaagattttaaatctgctatattagaagatctcagtcctcaacca
gtatcagacataaatttaaagcttatatatgatgatttggttgagagaatgaaggaaaaa
gaagaaaaagaggccagaaagcttcagcgtatggctgaagaatttaccaatctgttgcgc
actctcaaggaaataaccgcagcttcaaattgggaagataccaaaccactgattgaagaa
agtcaagagtacagatcgattggagatgaaagtgctagcagagggttatttgaggaatac
ataacgagcttacaagaaaaggcaaaggaaaaggagcgtaagcgtgatgaggaaaaggtt
agaaaagagaaggaaagggatgagaaggagaagcggaaagacaaggataaggagagaagg
gaaaaggaaagggaacgtgaaaaagagaggggaaaagagaggagtaaaagggaagagtca
gatggtgagactgctgtagaagcgagcgaaggtcacaaagaggagaaaagaaagggaaaa
gatcgagaccgaaaacataggagacggcatcacaattctgatgaagatgtcagttctgat
agagatgacagagaagagtcaaagaaatcctcccgtaaacatggtaatgatagaaaaaaa
tcaagaaagcacgcaaactcgcctgaatctgatagtgaaaaccggcataaaagacagatg
aaagaacaaagggagggtggtcgtcgaagtggttatgacgagctagaggatggagaggtt
ggggaggatggcgaaatccgacattaa
DBGET
integrated database retrieval system
