Camelina sativa (false flax): 104758857
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Entry
104758857 CDS
T05044
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03022
Basal transcription factors
csat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104758857
09124 Replication and repair
03420 Nucleotide excision repair
104758857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104758857
03400 DNA repair and recombination proteins [BR:
csat03400
]
104758857
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104758857
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104758857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
104758857
NCBI-ProteinID:
XP_010480119
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Position
17:complement(33886997..33893130)
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AA seq
593 aa
AA seq
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MAGEQVENRGVKYKSSIKDPGTPGFLRINEVMLLFVPNDPKSDSKLKLQTKNIKSHKNTK
EGSSKPPWLHLTTYQGRNHIFEFENYPDMHTCRDFVAVLIKSDEEPKKAAVSTSTEQLSI
KEFELRFKLLKENSELQRLHKQFVESKVLTEDEFWATRKKLLGRDSIRKSKQQLGLKSMM
VSGNKPSTDGRTNRVTFNLTPEIIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEY
LYSTKNTAVAAAEAAEDEELAVFLKPDEILARETRQKIRRVDPTLDMEADEGDDYSHLMD
HGIQRDGTMDVVEPQNDQFKRSLLQDLNRHAAVVLEGRSIDVDSEDTRVVAEALTRVKQV
SKADGETTKDANQERLERMSRVAGMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVVNVPR
GAKGLKRNVHEAYGLLKESIVEIRATGLSDPLIKPEVSFEVFSSLTRTISTAKNIIGKNP
RESFLDRLPKSNKDEVLHHWTSIQELLRHFWSSYPITTPYLHTKVGKLKDAMSNTYSKLD
AMKESVQSDLRHQVSLLVRPMQQALDAAFQHYDADLQRRTAKSNGGERPNGYV
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggctggtgagcaagtggagaaccgaggagtcaaatacaagagctctatcaaagatcca
ggaactcctggatttctcagaattaacgaagtgatgttactcttcgtccctaatgatccc
aaatcagattcaaagctcaaattgcagactaaaaacatcaaaagtcataaaaataccaaa
gaaggatctagtaaacctccttggctccatctcactacctaccagggacggaatcatatc
tttgagtttgaaaattatcccgatatgcatacttgccgtgacttcgtcgcggtccttatt
aaatctgacgaggagcctaagaaagcagctgtctcgacatctaccgagcaactcagtatt
aaagaattcgagctacgcttcaagcttcttaaagaaaatagtgagctgcagagattgcat
aagcaatttgtggaaagtaaagtcctgacggaagatgaattctgggctacaaggaagaaa
ttacttggtagagattccatccgaaagtcaaagcagcagctcgggcttaagagcatgatg
gtttctggtaacaaaccatctactgatggacggactaatagagtgacgtttaacttgaca
cctgagatcatttttcagatttttgctgagaagccggctgtacggcaggcattcataaat
tatgttccgagtaagatgacagaaaaagacttctggacaaaatattttagagcagagtat
ctttacagcaccaaaaatacagcagtagctgcagcagaagctgctgaggacgaggaactc
gctgtatttctgaagcctgatgagatattggctcgggaaactcgtcaaaagattagacgg
gttgatccaactcttgacatggaggctgacgagggagacgactacagtcatcttatggac
cacgggatccagcgtgatggcaccatggatgttgttgaaccacagaatgaccagtttaaa
cgatcacttttgcaagatcttaatcgtcatgctgctgttgtattggaaggcagaagcatt
gatgttgattcagaagatacgagggttgttgcagaggctctcacacgggttaaacaagta
agcaaagctgatggggagaccaccaaggacgctaatcaggagagattggaaagaatgtcc
cgtgtagctggaatggaggatcttcaagcaccacaaaacttcccgttagccccgctttct
atcaaggatcctcgtgattactttgaatctcaacaaggaaacgtcgtcaatgtacccaga
ggagcaaagggattaaagagaaatgtccatgaagcttatggattactaaaagaatccatt
gtggagattagagctacaggattaagtgatccgttgattaagcctgaagtttccttcgag
gttttcagttcgttaacccgtactatctcaactgccaaaaatattattgggaagaaccca
cgagagagctttctagacagattaccaaagtccaataaggatgaagttctacaccattgg
acatcaatacaagaattactaagacatttttggtcatcttatccgataacgaccccatat
cttcataccaaggttggtaaactgaaggatgcaatgtccaatacttattcaaaactcgat
gcaatgaaagagtcagtgcaatctgatctccggcatcaggtttctttactggttcgccca
atgcaacaggctcttgatgctgcgttccaacactacgatgcagatctgcagagaagaaca
gctaagagcaacggcggcgaaagaccaaatgggtacgtatag
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