Camelina sativa (false flax): 104759049
Help
Entry
104759049 CDS
T05044
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104759049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104759049
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104759049
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104759049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
WEF-hand
DMPK_coil
Motif
Other DBs
NCBI-GeneID:
104759049
NCBI-ProteinID:
XP_019094978
UniProt:
A0ABM1R7J0
LinkDB
All DBs
Position
17:694117..698795
Genome browser
AA seq
848 aa
AA seq
DB search
MFVIFQECLKFVKNVHFSDSEDFTAKHFHPSDPLSDLHLDATTSLLKVLKAHDNVITSSQ
LVEEIEKVNAAILDCNSKLQNGEAKDSSASNAYGDDVEAEANAYFHQMFSSQLSVDAMVQ
MLSRYKDSLVQREKLIFECMIANLFEEYRFFPKYPERQLKIASILFGSVIKHQLISSLTL
GMALRLVLDSLRKPADSKMFLFGSKALEQFVNRLVELPQYCNHILQISHLRSTHPELVTV
IEQALSRISSGNLESDASVSHPAPSQSFPGNGELSGSSSGQSALQHSSPIQLQQQNEVHI
DDRSNVPSVPSNDARPLLPSLSTTSADVSVIPRNPGISTSSSTSSGLGRQTRGATSTRFG
SALNIETLVAAAERRENAIETPLQNVQDKVSFIINNLSIANIESKGKEFADILPQQYYPW
FAQYMVMKRASIEQNFHDLYLKFLDKVDSKLLFKEILQNTYENCKVLLGSELIKSSSEER
SLLKNLGSWLGKLTIGRNYVLRAREIDPKSLIVEAYEKGLMIAVIPFTSKVLEPCQNSIA
YQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDIKEVAPTSLLKDRKREID
GNPDFSNKDLISQPQMISEPKTVSPLKQIDLPLDVANSPNTDVPSKLLSQYVAPQRVYPN
TLMEEEKVATLGLSDQLPSPQGLFQSTPSPLFSISQQLSAALPNIGNHVVINQKLSGFGM
HFPFQRVVPLAMDRAIKEIVSGIVQRSVCIACQTTKELVLKDYAMEPEESRIYNAAHLMV
ASLAGSLAHVTCKEPLRTSISGHLRNSLQGLNIANESLEQIVQLVTNDNLDLGCAAIEHA
ATDKVFVR
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtcatatttcaggagtgtctcaaatttgtcaagaatgtgcatttcagcgactca
gaggattttaccgccaaacattttcacccttctgatccgttatcagatcttcatctggat
gcaactacttctcttttgaaagttttgaaagctcatgataatgtgattacttcatctcaa
ctggtcgaggagatagaaaaggtcaatgccgcaattttggattgtaattcgaaactgcag
aatggggaggctaaagattcatcagcttccaatgcatatggagatgatgttgaggcagaa
gcaaacgcttatttccatcaaatgttttctagtcagttgagtgttgatgcgatggttcaa
atgctttctcgatacaaggactctttagttcaaagggaaaaattaatttttgaatgcatg
atcgctaatctgtttgaagaatatcgttttttccccaagtatcctgagagacagctgaaa
atagcctccatcctctttggttctgttataaagcaccagcttataagttccctcactctg
gggatggccctgcgtctagtcttggattctttgcgtaaacctgcagattcaaaaatgttt
ctctttggaagcaaggctctagaacagttcgtgaaccgtctggttgaattgcctcaatac
tgcaaccatattctgcaaatatcgcatctgcgtagcactcaccctgagttagtcactgtt
attgaacaagcactttcaaggatatcatctggtaatttagagtccgatgcctctgtttca
caccctgctccctcgcagtctttccctggaaatggcgagttgagtggttctagctctggc
caatctgcattacagcattcttctcccatacagcttcaacagcaaaatgaagtgcatatt
gatgaccgcagcaatgtgcctagtgtgccatctaatgacgcaaggccacttctgccatcg
ttatcaaccacttcggctgatgtttctgtcattccaaggaatcctggcatttcaacgtct
tcttcaacctcatctggtcttggtcgtcaaactcgtggagctacttcgacaaggtttggc
tctgctttgaacatagaaaccttggttgcagcagctgaaagaagagaaaacgcaatcgag
actccactgcagaatgttcaggataaagtttctttcataatcaataatctctctatagca
aacattgaatcgaaagggaaagagtttgctgatattttacctcaacagtattatccttgg
tttgcacagtacatggttatgaaaagagcgagcatcgagcaaaattttcatgatctgtac
ctgaagttcttggataaagttgattcgaagctgttatttaaggagatacttcaaaatact
tatgaaaattgcaaggttcttttgggttcagagctcataaagtcaagttctgaagagcga
tctcttcttaaaaatttaggcagttggcttggaaagttgaccattggaaggaattatgtt
ttaagggcgcgagaaatagatccaaaatccttgattgtggaggcatatgaaaaagggttg
atgattgcggtcattccatttacttcaaaggttctggagccatgccaaaacagtattgcc
tatcagcctcccaatccttggacgatggctatacttggcttgctcgctgagatttattca
atgccaaacctaaaaatgaatctgaagtttgacatagaggttttattcaagaaccttggc
gttgatataaaagaagtagcgccaacttcccttctaaaggaccggaagagagaaatagat
gggaatcctgattttagtaacaaagatcttatctctcagccgcagatgatatcagagcct
aaaacagtttctcctcttaagcaaatagacctacctcttgatgttgcaaattctccgaat
acagacgttccctcgaagttattatcacagtatgtagcccctcaacgtgtttatcctaat
actttgatggaagaggaaaaagtggcaactctaggtttgtctgatcagttgccgtcacct
caaggactgttccagtcaactccgtccccattgttttctatcagtcagcagttgtcagca
gcacttcccaacattggaaatcatgttgttattaatcagaagttgagcggatttggtatg
cactttccatttcagagagtggtaccacttgccatggacagagctatcaaggagattgtg
tctggtattgtgcagcgaagtgtttgtattgcatgccaaacaacaaaagaacttgtgctg
aaggattatgccatggaacccgaagaatcacgtatttataatgcagctcacttgatggtt
gcgagtttagctgggagtttggctcatgtgacatgcaaggaacccttgcgtacttcaata
tccggtcatctacggaattctctccagggtctgaatattgcaaatgaatctcttgaacaa
attgtgcaacttgtcaccaatgacaatcttgatttgggttgtgcggctattgaacatgcg
gctacagataaggtttttgttagataa
DBGET
integrated database retrieval system
