Camelina sativa (false flax): 104760257
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Entry
104760257 CDS
T05044
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104760257
Spliceosome [BR:
csat03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
104760257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_N
TPR_8
TPR_10
Motif
Other DBs
NCBI-GeneID:
104760257
NCBI-ProteinID:
XP_010481457
UniProt:
A0ABM0X6G4
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All DBs
Position
18:complement(1720755..1725530)
Genome browser
AA seq
1037 aa
AA seq
DB search
MVTTEVRTAVSDKEPLPPSPELKGSTDFLENDRLQETFSSGALDFDEWVLLISEIETSFP
DDIKKLCLVYDAFLLEFPLCHGYWRKYAYHKIKLCTLEDAVEVFERAVKSATYSVAVWLD
YCSFGVAAFEDPHDVSRLFERGLSFVGKDYSCCTLWDRYIEYLLGQKQWISLAHVYLRTL
KNPSKKLDLYYKNFRKIAASLKEKIKCGIDVNGDLLSDPMEEELVPTRHTDEEISVVVRD
LMGPSSSSALSKALHAYLSIGEQFYQDSQKLMEKISCFETNIRRPYFHVNPLDANQLENW
HAYLSFAESFGDFDWAIKLYERCLIPCANYTEFWFRYVDFVEIKGGRELANFALARASQT
FVKNASVIHLFNARFKEHVGDASAASVALSRCSEELGFGFVENVTKKANMEKRLGNFEAA
VTIYREALEKTLTGKENVETTGLLYVRLSRLKYMITDSADDAAQILIEGNEKVPHCKLLL
EELIRLLMHGGSRQVDRLDPIIDKEISHQADSSDGLSVEDKEEISNLYMEFIDLSGTIHD
VRKALGRHIKLFPHSARAKLHESRPLGRSFRELIQRREKSRECSNQDLLTNKGISSTVDS
PPKEKKESSLDSDGAQSVDAHSKDAVRVDYVNTELNRGFLASGNLVEGNKNVAKRENLCE
SQSDLSIGLTADEGGERSREVSLPIQATPKHGFVTKQAHFSSNSVDTVKSDAIVIQPSGS
LSPQSYQSQESLRQTGRNRYHRRDLNQTHKDWKPRSQERPPQMSYSVGTLGQQMGVAPRD
NGVAVQSSISQNPQNQFQNSALQMHPVVQTSNAYPQTQILGQHMIAHPPDSQNLQNQYPN
STSQVQTSFAYPQTQIPQNPVQSNYQQEGQMQSHEAYNQMWQQYCYNYYYYQQQQQQLMS
EQPQPNQNAQPQLDQNLLQLLSKQYQSQAKTQYPQSQQVEQINTQQQNQEPENQQQIQFQ
QQQQQQEWYQQQQQWQQQQYALYLQQQQLQGEAKCEEQRPSMPQPQVSTTNSDIQKSQES
GAVNEANLSSDTSISSI
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggtgacgacggaggttaggaccgccgtctccgataaggaaccattgccaccgtctcca
gaattaaagggatctactgatttcctcgaaaacgacagattacaagaaactttttccagt
ggagcacttgattttgatgaatgggttttgttaatctccgaaatcgagacttcgttcccc
gatgatattaagaagttgtgtttagtttacgatgctttcttgttggagtttccgttgtgc
catggctactggaggaaatatgcttaccataagataaagttatgcactttggaagatgct
gttgaagttttcgaacgagcagtcaaatcagctacttattctgtagctgtgtggctcgac
tattgctcattcggtgttgctgcttttgaagatcctcatgatgttagtagattatttgaa
aggggactttcatttgttggaaaagattactcttgctgcactctttgggacagatatata
gaatatcttctgggacaaaagcaatggatttcactggctcatgtatatctccggaccctg
aaaaatccgtccaaaaagttggatctctattacaaaaacttcaggaagattgcggcttct
ttgaaagagaagattaaatgtggaatagatgttaacggagaccttttgtcagaccccatg
gaagaagagttggtccctacacgtcacactgatgaggaaatctctgttgttgtgagagac
ttgatgggtccttcctctagctcagctttgtcaaaagcactgcatgcatatttgtcaatt
ggggaacagttctatcaagattcacagaagttgatggagaagataagctgctttgagaca
aatatccgcaggccttattttcatgtaaatccgttggacgctaatcagctggaaaattgg
catgcatatttaagcttcgccgagtcatttggggactttgactgggctattaagctttat
gagagatgcttaataccttgcgctaattacaccgagttctggttccgctatgtggatttt
gtcgaaatcaagggtggaagggagctagcaaactttgcattggctcgagcgtcacagact
tttgtcaagaatgcatctgttatccatctattcaatgcaagattcaaggaacacgttgga
gatgcatctgctgcttcagttgctttgtctcgatgtagtgaagaactgggttttggtttt
gttgaaaatgtaactaaaaaggctaacatggaaaagcgtctgggtaattttgaagctgct
gttactatatacagagaagctctggagaaaacactcactggaaaagaaaatgtggaaacc
accggactgctgtatgttcgattgtctcgcctcaagtacatgattacagatagtgctgat
gatgcagctcagattctgatagaaggcaatgagaaagttcctcactgcaaattacttcta
gaggaacttataaggctcttgatgcatggagggtcgcgacaggtggatcggttagatcct
atcatagataaggaaatatctcaccaggcagattcctccgatggtctgagtgtagaggac
aaagaggagatatcaaatttatacatggagtttattgatctctctggaaccatccatgat
gtgaggaaggctttgggtcgacacatcaaattattcccacattctgctagagccaagtta
catgaatcccgtcctttaggaagatcatttagagagttaattcagagaagagagaagagt
cgtgagtgctcgaatcaggacttattaacaaacaaaggcattagcagcacagtcgattca
ccaccaaaagaaaagaaagagtcatctctagactctgatggtgcccaatctgtagatgcc
cattctaaagatgctgttcgggtggactatgtaaacactgagcttaatcgggggtttctg
gcttcaggaaatctagttgaaggaaacaagaatgttgctaagagggagaatttgtgtgag
tcacagagtgatctgtccatcgggttaacagcggatgaaggtggtgaacgctctcgtgaa
gttagcctacctatccaagccacaccaaaacatggttttgtcacgaaacaagctcacttt
tcgtccaattcagtagatactgtgaaatcagatgctatagtgatccaacctagtggctca
ctgagtccccaaagttaccaaagtcaagagtctcttaggcaaactggtcggaacaggtac
cacagaagagatttaaaccagactcacaaagattggaaacctcgttctcaagagagacct
cctcagatgtcttattcagtcggaactctcggtcagcaaatgggtgttgctcctcgagac
aatggggtagcggtacaaagctcaatctcacagaatccgcaaaaccaatttcagaactct
gcacttcagatgcatcctgtggttcaaacatccaatgcatatcctcaaactcagatactt
ggtcagcacatgattgcacaccctccagactcacaaaatctgcagaaccaatatccaaac
tctacatctcaggttcaaacatcctttgcttatcctcaaactcagattcctcagaatcca
gtgcaaagtaactaccaacaagaaggtcagatgcagagtcatgaagcttataaccagatg
tggcaacagtattgttataactattattactaccagcaacaacaacaacagcttatgtct
gaacagccacaaccaaatcagaacgctcagccacaacttgatcagaatcttctgcaactt
ctctccaaacagtaccaatctcaagccaaaacccagtatccccagtctcaacaagtggaa
cagatcaatacacaacaacagaaccaagaaccagaaaatcagcagcaaattcagttccag
caacaacaacaacaacaagagtggtaccaacagcaacaacaatggcaacaacaacagtat
gctctctatcttcagcaacagcagttgcaaggagaagcaaaatgcgaggaacaaagaccc
tctatgccacagccacaggtctccacaaccaacagtgatattcaaaagagtcaagaatct
ggagcagtcaatgaagcaaatctatcttctgacacttccatcagttctatatga
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