Camelina sativa (false flax): 104760373
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Entry
104760373 CDS
T05044
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03030
DNA replication
csat03420
Nucleotide excision repair
csat03430
Mismatch repair
csat03440
Homologous recombination
csat03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104760373
03420 Nucleotide excision repair
104760373
03430 Mismatch repair
104760373
03440 Homologous recombination
104760373
03460 Fanconi anemia pathway
104760373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csat03000
]
104760373
03032 DNA replication proteins [BR:
csat03032
]
104760373
03400 DNA repair and recombination proteins [BR:
csat03400
]
104760373
Transcription factors [BR:
csat03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104760373
DNA replication proteins [BR:
csat03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104760373
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104760373
MMR (mismatch excision repair)
104760373
DSBR (double strand breaks repair)
HR (homologous recombination)
104760373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
RADX
CDC24_OB3
zf-CCHC
BRCA-2_OB1
BBS2_hp
Motif
Other DBs
NCBI-GeneID:
104760373
NCBI-ProteinID:
XP_010481593
LinkDB
All DBs
Position
18:complement(2726933..2730506)
Genome browser
AA seq
882 aa
AA seq
DB search
MAVNLTAEAIARMLNGEVTSETDMTPVVQVIELKMIQTKRNQNHESSNRYKITFSDGILS
QQGMLNTSLNGLVMQGSIQFGSIVKLTRFVCNQVQTRRIVVVADLEILVEKCDIIGTRVP
NEPGQSSVFDQQRGGLGSVNTQQSNGGGFEQQQARRTDLNGGRYGANSPQPQVVHNNPEA
MRYGVSANLPQPQVVHNSSDAGRYGLPANSPQRQVGHNSSDAGRYGANLAQPQVGHNSCD
VGRYGLPASLPQPQVGQRYGTGSGYPETSPSTRPYGSSNAGYGGSRLEQPRAPPATTAYS
RPVQSSYQPQPPPMYVNRGPVARNEAPPRITPISALNPYQGRWTIKVRVTCKGALRRFSN
PRGEGKLFNFDLLDSGGGEIRVTCFNDVVDQFFDQIVVGNVYLISRGSLKPAQKNFNHLQ
NDYEIHLDSASTIQQCYEDDPTIPRHQFHFRNVGEIENMESNSITDLIAIVSSINPAVSI
MRKNQTEVLKRALQLKDMSGRSVEFTMWGDFCNAEGQKLQMLCDSGASPVLAVKAGRISE
FNGKQVSTIGSSQLFIEPDFPEARELREWYEREGRNVHFTSISREFTGAGRQELRKVITQ
IKDDKLGTSEKPDWITVCATISFMKVENFCYTACPIMNGDRPCSKKVTNNGDGTWRCEKC
DKSVEECDYRYILQIQLQDHTGLTWATAFQEAGEEIMGISAKDLYYVKYEHQEEEKFEDI
IRSVTFSKYIFKLKIKEETYSDEQRVKATVVKAEKINYSSDTRFMLEAMDKLRTGDANSL
LVKTESSNYRSDAVNSGIGTSGTRETASVDARREFGLPAANQVGQYGNQYAGPINGITSC
NACGSNGHVSANCPSLMSEPQGQYTQGRYTGGGTPRQHVGGY
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgaacctgacggcggaagcgatagcgaggatgttgaatggagaagtgacaagt
gagactgatatgacgccagtggtgcaagttatagagttgaagatgattcagaccaagcgt
aatcagaatcatgaatcaagcaatcgatacaagattactttttccgatgggatcctctcg
caacaaggcatgcttaatacttcattgaacggtctcgttatgcaaggcagtattcaattt
ggttctattgtgaaactcactcgtttcgtctgtaatcaagtccagactcgaaggatcgtt
gttgttgcggatttggaaattcttgttgagaaatgcgatattattggaactcgtgtgcct
aatgaacctggccaaagctcagtgtttgatcaacaacgtggtggattgggatctgtaaac
acacaacaaagcaatggtggtggttttgagcagcaacaagctagaaggactgatttgaat
ggtgggagatatggtgctaattcacctcaacctcaagttgttcataacaatcctgaagct
atgagatatggtgtatctgctaatttacctcagcctcaagttgttcataatagttctgac
gctgggagatatggtttaccggctaattcacctcagcgtcaagttggtcataacagttct
gacgctgggagatatggtgctaatttagctcagcctcaagttggtcataacagttgtgac
gttgggagatatggtttaccggctagtttacctcagcctcaagttggtcaaagatatggt
actggttctggttatccggaaacatcaccttccaccaggccatatgggagctcaaatgca
ggttatggaggctctaggttagagcaacctcgggcacctcctgcaacaaccgcttattcc
cgtccagttcaatcgagttaccagccacagccaccaccgatgtatgttaacaggggccct
gtggctaggaacgaagctcccccgaggataactccgatttctgctcttaatccttaccag
ggtcggtggaccatcaaggtcagggtcacgtgtaagggagcactgaggcgttttagtaat
ccgcgtggggaagggaaattgttcaattttgatctccttgactctggtggtggggaaata
cgggtgacttgtttcaacgatgtggttgatcagttctttgaccagattgtagttggtaat
gtgtatctgatttcaagggggagtttgaaacctgctcagaagaacttcaatcatcttcaa
aatgattatgaaatacatttagactctgcgtcaacgatacagcaatgctatgaagatgat
cctaccattccacgccatcagttccattttcgtaacgttggtgaaattgaaaacatggag
agcaacagcataactgatcttattgctatcgtttcgtctatcaatccggcagtatccatt
atgcggaaaaaccaaactgaggtacttaaaagggcacttcagttaaaggatatgtcgggc
agaagtgtcgagtttaccatgtggggtgatttctgcaatgcggaaggacagaagttacaa
atgctttgtgattctggggcatccccggttcttgctgtgaaggcaggcaggatcagtgaa
ttcaacgggaagcaagtgagcaccattggatcaagtcagttgttcatagagccagatttc
cctgaagccagagaattaagagaatggtatgagagagaaggaagaaacgttcattttacc
tccatatcaagagagtttactggtgctggcagacaagaacttcgcaaggtaattactcag
atcaaggacgacaagctagggacctcagagaagccagactggatcacagtctgtgccacc
atttcattcatgaaggttgaaaatttctgctacacggcttgtcctatcatgaatggagat
cgtccgtgcagcaaaaaagtcacaaataatggagatgggacatggcgttgtgagaagtgt
gacaaatctgtggaagaatgtgactacaggtatatattgcagatccagttacaggaccat
actggtctaacctgggccacagcattccaggaagctggtgaggagataatgggaatatct
gcgaaagatttgtattatgtgaagtatgaacatcaggaggaggagaaattcgaagacatc
atccgcagtgttactttctccaagtacattttcaagctgaagattaaagaagaaacttat
agcgacgagcaacgggttaaagcaactgttgtgaaagctgaaaagattaactattcttca
gataccaggttcatgctagaggcaatggataaactcaggacaggagatgcaaattctctc
cttgtaaagacagagagttccaactacaggtctgatgcagtgaactccggtattggaacc
tcgggaactagagagaccgcatcagtggacgcacgcagagaatttggattacctgcagca
aaccaagtgggtcaatatggaaatcagtatgcagggcctatcaacggtattactagctgt
aacgcttgtggtagcaatggtcatgtttctgcaaactgcccaagccttatgagcgagcca
caaggacaatacacacaaggaagatacacaggaggtggcacgccaaggcaacatgttggc
ggctactga
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