Camelina sativa (false flax): 104761935
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Entry
104761935 CDS
T05044
Name
(RefSeq) E3 ubiquitin-protein ligase listerin-like
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csat03009
]
104761935
04121 Ubiquitin system [BR:
csat04121
]
104761935
Enzymes [BR:
csat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104761935
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
104761935
Ubiquitin system [BR:
csat04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104761935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
zf-RING_2
HEAT_GCN1
zf-rbx1
zf-RING-like
FANCL_C
zf-C3HC4
HEAT_MROH2B_C
Mak10
zf-ANAPC11
zf-C3HC4_2
ParcG
C1_1
RINGv
Motif
Other DBs
NCBI-GeneID:
104761935
NCBI-ProteinID:
XP_010483427
UniProt:
A0ABM0XBD0
LinkDB
All DBs
Position
18:16046109..16060958
Genome browser
AA seq
1859 aa
AA seq
DB search
MGKPKGDALRSKARPSSSSLAASLLPSASAAAAVGFGGYVGSSRFETSISNEDSAPFLDL
DSEVSQHLQRLPRKDPTTKIKALASLSELIKQKKGKELLPIIPQWTFEYKKLILDYNRDV
RRATHDVMTNVVTGAGRDLAPHLKSIMGPWWFSQFDLASEVSQAAKSSLQAAFPSQDKRL
HALNLCSTEIFAYLEENLKLTPQNLSDKALASDELEEMYQQMISSSLVALATLLDILLRE
PDKASSANVNSESKLASKARALAISAAEKLFSFHKCFLNFLKSGSPSIRSATYSLLSSFI
KNVPEVFGEDNIRCLAPALLGVFRENNPTCHSSMWEAVLLFTRKYPQSWVYLNVHKSVLN
HLWQFLRNGCYGSPRVSYPALILFLEVMPTQSVEADKFFVNFFKNLLAGRSICDSSSTDQ
LSLLRATTECFLWGLHNASKYCDGPNPIHDLQVDLIDKVLVKILWADFFELSKGSIPPIQ
RKSAETLGMGNSFSYLQELGRCIIEILSGINLLEQNLLSFFCKSVQESFLDMLQQGNLEI
VSGSVRKMIDFLLLLERYSVLEGESWPLDQFTGPLLSKAFPWIKSSELVDGVKLLSVSVS
VFGPRKIVPILIDDIETSTLLSVEKGRDMSPEKFIKVFQEIFIPWCMDVCDSSTAARQDL
LLSLLDDECFTQQWDDVISYVSNQRHQGCNNLAAMKVLLEKARGEITKRGSGQELNQRVG
SRPEHWHHKLIDSTAISLVRSSLGTTTSAAQFLCSVLGGSTEDSSISFVSRSSLVLIYRG
ILEKLLSFIKLSPLCSFNDICSSLIVEGIEFDSSSTVDEIVVAKFAAEVIDGSFFSLKAL
NQDATLLSTILSSILIIDLESRMTSLVDDTQYESKEKRKDRNLVCDFIHAVCSKMDNQFW
RSIDYDVRKSSASILVQSLRSVVLLEDDLQPCELTLLCASRMTEVLEYLSLDQSDEENIC
ALLVLESDVWPMWVSPSTSASINTHGMPVHLCELKKSKSERFVSFINNLIMKMGIHRFLV
GHKDDGFASQAWFSVEILCTWEWPGSNVQTSFLPTLVSFCKSEPSSGGLLNSIFDILLNG
ALVHGEDETVSLGNMWIDFKNNIEDIVEPFLRALVSLLHTLFKEDLWREENAMGAFEMLT
DKLYIGEETSTNCLRIIPFIMSTMISPLRTKIKSGVSGKDALLPLEVLLINWLEKSLSFP
PLVLWQSGEDMQDWFQLVISCYPVSEKAEEAKELQRHMSNEERTLLLDLFRKQKQDPGAS
SVVTQLPAAQILLARLIVIAVSYCGNDFNEDDWDFVFSNLKRLIQSAVVVMEETSENVND
FINGVSSIEKENDTLEGLGHIVFISDASVNNAQNALSAFSLLIALVKHKSIEGEDNLKSL
ADETWDPVKDRILEGVLRLFFCTGLAEAIAASYSPEAASIVASFRVDHLQFWELVAQLVV
DSSPRARDRAVRAVEFWGLSKGAINSLYAIMYSSNPIPSLQLAAYVVLSTEPISRLAIVA
DGNAPLNDESLNDQDSGDTGVTSKEKLRLRDEVSCMVEKLNHELLDTDLTAPERVQTFLA
WSLLLSHVNSLPSLTQGRERLVQYIEKTANPLILDSLFQHIPLELYMAQSLKKKDGDIPT
ELSVVASAATHAIMTGSSLSTVESLWPIETGKMASLAGAIYGLMLRVLPAYVRGWFSEMR
DRSASSLIEAFTRSWCSPSLIKNELSQIKKADFNDESFSVSISKAANEVVATYTKDETGM
DLVIRLPVSYPLRPVDVNCTKSIGISEAKQRKWLMSMQLFVRNQNGALAEAIRIWKRNSD
KEFEGVEDCPICYSVIHTVNHSLPRRACVTCKYRFHKACLDKWFLTSNKKLCPLCQSPC
NT seq
5580 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaacccaaaggagatgctttaaggagcaaagctcgtccatccagcagcagcttg
gcggcttctctgttgccttctgcctctgcagctgcggccgtaggttttggtggctatgtc
ggtagctctagattcgaaacttctatatcaaacgaagactctgctcccttcttggatttg
gatagtgaggtttcccaacacttgcaacgtcttcctaggaaagaccctacaacaaagatt
aaagctcttgcttccctgtcagaactgattaagcaaaagaaaggaaaggaacttctgcca
ataatcccacaatggacatttgagtacaagaagttgatactggactacaatagagatgtt
cggcgagctacgcatgacgtcatgactaatgttgtcactggtgccgggagagatttagca
cctcatctaaagtctataatggggccctggtggttttcgcagttcgatttggcatctgaa
gtttctcaagcagcaaagtcttctctacaggcagcatttccttcccaggataagagattg
cacgccttgaatttatgttcaactgagatttttgcttatctggaggaaaatctcaaactt
acacctcaaaatttatctgataaagcccttgcttcagatgaattagaagaaatgtaccag
cagatgatatcgtcatctctggtggcattggctacactactagatattttgctccgggaa
cctgataaagctagctctgcaaacgttaattctgaatcgaaacttgcctcaaaggctagg
gctctggcaatctccgcagctgagaagttgttctctttccataaatgctttctgaacttt
ctaaaatctggaagccctagtattcggtcagctacttattctttattaagcagcttcatc
aaaaatgttcctgaagtctttggcgaagacaacatcagatgccttgcaccagctctgctt
ggtgttttccgagaaaataatccaacctgccactcatcaatgtgggaggctgtcttgctg
ttcactagaaagtatcctcagagttgggtctacttgaatgttcataaatctgttctgaat
catttatggcagtttctaaggaacggttgctatggatccccacgggtttcttatcctgca
ctgatattgttcctggaagttatgccaacacaatctgtagaagctgataagttctttgtg
aattttttcaaaaacttattagctggaagaagtatatgtgattcttcaagtacggatcaa
ttatcacttcttcgggcaacaactgaatgtttcctctggggattacataatgcttcaaag
tactgcgatggtcccaatcccattcatgatctccaggttgatctaattgataaagtcctc
gtgaagattctatgggcagacttctttgaactatctaagggcagcattccacctattcag
aggaagtcagctgaaactcttggcatgggtaattcatttagttatctgcaagagctaggt
agatgcatcatagaaatcctttcagggattaatttgctcgaacagaacctgctgtctttt
ttctgtaaatctgttcaagagagcttcttggatatgcttcagcagggaaacttagagata
gtttcgggtagcgtgagaaaaatgattgattttctcttgttgttggagagatattcagtt
ttggaaggtgagagttggcccttggatcaatttacggggccactgctgtcaaaggctttc
ccgtggataaaatcatctgaattggtagatggtgtgaagcttttgtcagtttcagtatca
gtgtttggaccgagaaagatagttccaatactaattgatgatatagagacttctaccctt
ctctctgttgaaaaagggagggatatgagcccagagaagttcattaaagtttttcaagaa
atttttattccttggtgtatggatgtatgtgactcgtcgactgcagctagacaagatctc
ctgctttcattacttgatgatgaatgtttcactcagcagtgggatgatgtcatttcttat
gtatctaaccaacgacatcaggggtgcaataatctggctgctatgaaagtgcttttagaa
aaggcaaggggtgaaattacaaaaagaggttctgggcaggagttgaatcaaagagtaggt
tctcggccagagcattggcatcataaactcatagactcaactgctataagtcttgtccgt
tcctccttagggactacaacctctgctgctcagttcctgtgttcagttctgggcggttca
actgaagacagcagtatttcttttgtgtcaagaagctcgttggtcttgatatatagaggg
atccttgaaaagctgctatcttttatcaaattgtcaccgttatgctcatttaatgatata
tgttcatctcttattgttgagggtatagagtttgattcgagtagtactgtggacgagatc
gtggttgctaagtttgcagctgaagttattgatggtagtttcttcagtttgaaggctctg
aatcaggacgccactctactttcaactattttgtcttctattttaatcatcgacttggag
agtagaatgacatcactagtggatgatacgcaatatgagtccaaagagaaaagaaaggat
cggaatcttgtgtgtgattttattcatgctgtttgctctaagatggataatcagttctgg
agatccatagactatgatgtccggaagagttcagcaagcattttggttcagtcccttagg
tctgttgtcctacttgaggatgatctgcaaccttgtgaacttacactattatgtgcttca
aggatgaccgaggtgttggaatatctctcactggatcaaagcgatgaagaaaatatatgt
gccctcctcgtgcttgaaagtgatgtatggcctatgtgggtcagccccagcacgtcagct
agcataaatacgcatggtatgcctgttcatttgtgcgaattgaagaaatctaagagtgaa
agatttgtttccttcattaacaacctgatcatgaaaatgggaattcaccgatttcttgtt
ggccacaaagatgatgggtttgcctctcaagcttggttttccgtagagatactctgcacg
tgggagtggccagggagtaatgttcaaacttctttcctgccaactcttgtctcgttttgt
aagagtgaaccatcaagtgggggcttactaaattctatttttgacattctactcaatggt
gctcttgtgcatggagaggatgagacagtgagcttagggaacatgtggattgactttaag
aataacatagaggacatcgtagaaccatttttgagggctctggtgtcattgcttcacact
ttgttcaaggaggacctttggagagaagaaaacgccatgggtgctttcgaaatgctcaca
gataaactttatataggggaagagacgagcacaaactgtttgagaatcattcctttcatt
atgagcactatgatttcaccattacgtacaaaaataaaatctggtgtttctggtaaagat
gcattactgccactagaagttttgcttataaattggctagagaagtctttgtcgttccct
cctctggtactctggcaaagtggggaagatatgcaggattggtttcagcttgttatctct
tgttatcccgtaagcgaaaaggctgaagaagcaaaggaactacagaggcatatgagcaat
gaagagagaacactcctgctagacttgttccgcaaacaaaagcaagatcctggtgcatca
agtgtagttacccaacttccagctgcccaaattctgctggcgagactaattgttattgca
gttagttactgtggaaatgattttaatgaggatgactgggattttgtcttttctaatttg
aagcgtctgatccagtctgcagtagttgtgatggaggaaacttctgagaacgtcaatgac
ttcatcaatggcgtttcttccatagagaaggagaatgatactcttgagggacttgggcat
attgtgtttatttctgatgcttctgtgaacaatgcccagaatgctctctcagcattttcg
ttgcttattgcgttagtaaagcataaatcgattgaaggtgaagacaatctgaaatccttg
gcagatgaaacatgggatccggttaaggatcggatacttgaaggtgttctgcgtcttttc
ttctgcaccggtcttgctgaggctattgctgcttcatattccccagaggcagcatctatt
gttgcttcatttcgagttgatcatttacagttctgggagttggtggctcaacttgtggtc
gactcttctccgcgtgcaagagatagagctgtcagagcagtggaattttggggtctaagc
aagggagccataaactctttgtatgcaataatgtactcttccaatccaattccgtcattg
caacttgctgcatacgttgttttgtctactgagcctatttccaggctggccatagttgct
gatgggaatgcaccactgaatgatgagtctctcaatgatcaggactcaggagatactggt
gtgacatctaaagagaagctacggctaagagacgaagtatcttgtatggttgagaagtta
aatcatgaacttcttgatacggatttaactgcaccagaaagggtgcaaactttcctggca
tggtctttgttactctcgcatgttaactctttaccttcactaacacaaggacgagaaaga
ctggtgcagtatatagagaaaactgcaaatccgttgatattagatagtctttttcagcac
attcctctagaattatacatggcacagagcttgaaaaaaaaagatggggatattccgacg
gagttatctgtggtagcttctgcagccactcatgcaattatgacgggttcgtccctctca
acggttgaatcactttggcctattgaaactggaaagatggcttcgcttgctggggcgata
tatggcctgatgctacgtgtccttccagcttatgttcgaggatggtttagcgaaatgcgt
gaccgttctgcatcatctctgattgaagcatttacaagatcgtggtgcagcccttcttta
ataaagaacgaactgtctcagataaagaaggcagactttaatgatgagagcttttcagtc
agcataagtaaagcggcaaacgaagtagttgctacatatacgaaggatgaaacagggatg
gatctcgtgatccggcttccagtttcttacccactcaggcctgttgacgttaattgcaca
aaaagtattggcataagcgaagcaaagcagaggaagtggttgatgtctatgcaactgttt
gttcgtaatcagaatggggctctggcggaggcgataaggatatggaagcgaaactcggat
aaggaatttgaaggagtagaggactgcccgatatgctacagtgtgattcacaccgtgaat
cacagccttccaaggcgggcttgcgtgacgtgcaagtacaggtttcacaaagcatgttta
gacaagtggttcttaacgtctaataagaaactctgccccttgtgccaatctccttgctga
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integrated database retrieval system
