Camelina sativa (false flax): 104761937
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Entry
104761937 CDS
T05044
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104761937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csat03400
]
104761937
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
104761937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
104761937
NCBI-ProteinID:
XP_010483428
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All DBs
Position
18:16037374..16045776
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AA seq
1259 aa
AA seq
DB search
MKRKHYFDFNHPFNQCPFEVFCSGTWKAVEYLRIENGAMTMPLLENGQVLDDIRPFQRLR
LRSRKATLVDCTSFLRPGLDVCVLYQKDVTVDEETTEPVWVDARILSIERKPHESECLCI
FHVSVYIDQGCIGSEKHRMNRASVLMGLNQISILQKLCKEQSLDRYYRWRNSEDCTSLVK
TRLNLGKFLPDVSWLLVTSVLKNIVFQIRTFHEKMVYQIVADECSSSSLSAMNITVEDGV
FMSKVVLFNPAEDTHQDTDVKQEIEEEVMELRRSKRRSGRPDRFADSESQPDSKDGWVRM
MPYRYSTWTDLSDDDEDYDEEECDDDRDTDDDLYLPLSQLLGKKGSTKGLSKDKRREIVL
IDKTEMKKRKKTERIGRNRELSVIPFTPVFEPIPLEQFGFNANSLCGGSSGSHLMDEIDK
YRSKAAKYGKNKKFEMDEMESDLCWNGPLRNVVQKTNGQHSRIRSVSGNTGVSEEPQIYK
KRTLSAGAYNKLIDSYMSRIDSTIAAKNEATNVVEQLMGLKNAASSSMEAEKSSSEDDDE
EETSENEMLWREMELCLASSYILDDNEVRVDNEAFHKALGGCEHDYELNEEIGMCCRLCG
HVGTEMKHVSAPFAHHKKWTTETKQVNEDDINTTKVNQDGAESHNYTIPVASSDMPSAEE
SDNVWSLIPQLERKLHLHQKKAFEFLWRNLAGSVVPAMMDPSSEKIGGCVISHTPGAGKT
FLIIAFLASYLKIFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLLHGRRTYCVAKENT
IQIEGIPKPSQDVMHVLDCLDKIQKWHAQPSVLVMGYTSFLTLMREDSKFAHRKYMAKVL
RESPGLLVLDEGHNPRSTKSRLRKALMKVDTDLRILLSGTLFQNNFCEYFNTLCLARPKF
VHEVLVELDQKFQTNQTEQKAPHLLENRARKFFLDIIAKKIDTKVGDERLQGLNMLRNMT
SGFIDNYEGNGSGSGSGDVLPGLQIYTLLMNSTDIQHRTLTKLQNIMSTYHGYPLELELL
ITLAAIHPWLVKTTACCTKFLNPQELSEIEKLKHDAKKGSKVMFVLNLVFRVVKREKILI
FCHNIAPIRLFLELFENIFRWKRGRELLTLTGDLELFERGRVIDKFEEPGGQSRVLLASI
TACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYR
RTTWKEWVSSMIFSEEFVADPSQWQAEKIEDDVLREIVEEDKVKSFHMIMKNEKASTGG
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaaagcattactttgacttcaaccatccatttaatcaatgtcctttcgaggtg
ttctgctcggggacatggaaggccgtggagtacttaaggatcgagaatggagcgatgacg
atgcctctcttggagaacggacaagtgttggatgatataagaccatttcagaggcttcgt
cttagatcaagaaaggccactttggtcgattgtacatcttttctaagacctggtctggat
gtttgcgttctctatcagaaagatgtcactgtggatgaagagactacagagccggtttgg
gtggatgcaaggatattatctatagagaggaagcctcatgaatctgaatgcttgtgtata
ttccatgttagtgtgtatatagaccaaggctgcatcggttcggagaaacatagaatgaat
agagcttcggtactgatggggcttaaccaaatctctatactccagaagctttgcaaggaa
caaagcttggaccgctactacagatggagaaactctgaggactgtacttcgctggtgaag
acaagactaaatctgggaaagttcttgcctgatgtttcttggttgcttgttacatcagtt
ttgaaaaacattgtgtttcagatcagaacctttcacgagaagatggtttatcagattgtg
gcggatgaatgctctagtagctctttgagtgcaatgaacatcacggtggaagacggtgtt
ttcatgtccaaagttgttttgttcaatccagctgaggatactcatcaagatactgatgta
aagcaggagatcgaagaggaggtaatggagctgcgtcgatccaagagaagaagtgggcgg
cctgatagattcgctgactctgagagtcagccagattcaaaggatggatgggtaaggatg
atgccatataggtacagcacatggactgatttaagtgatgatgatgaagattatgacgaa
gaagaatgtgatgatgatagagataccgatgacgatttatacttaccgttatcgcaatta
cttggaaaaaagggaagcacaaagggattaagtaaggataagcgaagagagattgttttg
atagacaaaacagagatgaagaagaggaaaaaaacagagagaattggtagaaatcgcgag
ctttcggttattcccttcactcccgtctttgaacctataccgttggaacagtttggtttc
aatgcaaatagtttgtgtggtggttcctctggaagtcatttgatggatgagatagataag
tatcgtagtaaagcagcaaaatatgggaaaaataagaagtttgaaatggacgagatggaa
tctgatctatgttggaatggacccctcaggaatgtggttcaaaaaacaaatggacagcat
tcccgaatacggtctgtttctgggaacaccggagtttccgaggaaccacagatttataag
aagagaacattgagcgcaggtgcgtataacaagctgatagactcgtacatgagtagaatt
gattctacaattgcagccaagaacgaagcgaccaatgttgttgagcagttgatggggtta
aagaacgctgcaagctcttccatggaagccgaaaaaagttcgagtgaggatgatgatgag
gaagagacgtcagagaacgagatgctatggagggaaatggaactatgcttggcttcttct
tacattcttgatgacaatgaggtgagagtggataacgaggcgttccataaagcactcggt
ggttgtgaacatgattatgaattgaatgaagaaatcggaatgtgttgcagattgtgtggt
catgtaggaactgagatgaaacatgtttctgcaccttttgcgcatcacaagaaatggacg
acagagactaagcaagtcaacgaagatgacataaatactactaaagtgaaccaagatgga
gctgagagtcataattacactataccagttgcttcctcagatatgccctccgctgaagaa
agtgacaatgtttggtctcttatacctcagcttgagagaaaactgcatttacaccagaaa
aaagcttttgagtttctctggaggaacctagccgggtcagtggttcccgcgatgatggat
ccgagttcagagaagataggtgggtgcgtgatttctcatactcctggagcaggcaaaaca
tttctgatcatagcttttcttgcaagctacttgaagatatttccgggtaaaaggccattg
gttcttgctccgaaaacaaccttgtacacatggtacaaggagttcatcaaatgggagatt
ccggtacccgttcacttgctccatggtcgtagaacctactgtgtggccaaagagaacacc
attcagatcgagggaattccaaaaccgagccaagatgttatgcatgttcttgactgtctc
gacaaaatccagaaatggcatgcacagcctagtgttcttgtaatgggttacacatcgttt
ctaacattgatgagggaagattcaaagtttgctcatagaaaatacatggctaaagtactg
agagagtctcctggattactggttctagacgagggacataacccgaggagtaccaagtcg
agattacgaaaggccttgatgaaagttgatactgatctgaggattctgctttcgggcaca
ttgtttcagaacaacttctgtgagtacttcaacactttgtgcttggctagacccaagttt
gttcacgaggttctagttgagttggatcagaagttccagacaaaccaaactgagcaaaag
gcgcctcacttgcttgaaaatagagctcggaaattcttcctcgacattatagccaagaag
attgacacaaaagtgggcgatgagcgcttgcaaggtctcaacatgttgaggaatatgacc
agtggtttcatcgataactatgaagggaacggaagcggaagcggaagtggtgacgttctc
ccaggtttgcagatttacacattgttgatgaactccacagatatacagcacagaactctt
accaaacttcagaacataatgtcgacttaccatggatatccactcgagctcgagttactc
ataacgttagcagctatccatccttggttggtcaaaaccactgcctgttgcaccaaattt
ctcaatcctcaggagctttccgagattgagaagctcaagcacgatgcaaagaaaggatca
aaagtcatgttcgtgcttaacctcgtgttccgggtggtcaagagggagaaaatcctcata
ttttgccacaacattgcgccgattcgcctgtttcttgagctgtttgagaatattttcagg
tggaagagaggccgagagctcctgaccttgacaggggatcttgagctgtttgagagaggc
agagtgatagacaaattcgaagaaccaggaggccagtcccgtgttctgctcgcttcgatc
acggcctgtgcagaaggcatcagtctaaccgctgcatcacgggtgatcatgcttgattca
gagtggaatccttctaagacaaagcaagcaatcgcacgtgcattcagaccgggacagcag
aaagtggtgtacgtttaccagctcttgtccagaggaacacttgaggaagacaaatacagg
aggacaacctggaaagagtgggtctcaagtatgattttcagcgaagaatttgtggcggac
ccatctcagtggcaagctgagaagattgaggacgatgttcttagagaaatcgtggaggaa
gacaaagtcaaatcattccatatgatcatgaagaatgaaaaagcttcaacaggtggctaa
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