Camelina sativa (false flax): 104762085
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Entry
104762085 CDS
T05044
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104762085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104762085
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104762085
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104762085
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
104762085
NCBI-ProteinID:
XP_010483614
UniProt:
A0ABM0XBS7
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Position
18:16659508..16666175
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AA seq
615 aa
AA seq
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MSNLHSSLNGSASNLPDGSGRSFAASYSGQSGAPSPSFHHTGNLQGLHNIHGSYNVGNMQ
GTLTSRNSSMNSIPSPGVQQPNGSFSSGRFASNNLPVNLSQLSHGSSHGHAGIPNRGGLN
VVGNPGFNSNANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITNSMGNMVGG
GNLGRNISSGGLSIPGLSSRLNLAANSGSGINVQGQNRMLGGVLPQGSQVMSMLGNSYHT
GGGPLSQNHVQSVNNMMLSDHSNDSSLFDINNDFPQLTSRPGSAGGTQGQLGSLRKQGLG
VPLAQQTQEFSIQNEDFPALPGYKGGNSDYPMDLHQKEQLHDNAMSMMHSQNFSMGRSGG
FNLGATYTSHRPQQQPQHTSSTGGLQGLGLRPLSSPNAVSSIGYDQLIQQYQQHQNQSQF
PVQQMSSINQFRDSEMKSGQSEADPFCLLGLLDVLNRSNPELTSLALGIDLTTLGLDLNS
TGNLYKTFASPWTNEPAKSEVEFTVPNCYYATPPPPLTRASFKRFSYELLFYTFYSMPKD
EAQLFAADELYERGWFYHKELRLWFFRVGEPLVRQATYERGTYEYLDPSSFKTIRKEHFV
VKYELMEKRPSLLQH
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatcttcattcatctctcaatggttctgcttcgaatttaccagatgggtcgggc
agatcttttgctgcttcttattctggacaatctggtgcaccatctccctcttttcatcat
accggaaaccttcagggacttcataatattcatgggagctataatgtcgggaacatgcaa
ggtacacttacatcaagaaactcaagtatgaatagtataccatctcctggggttcaacaa
cctaacgggagtttttccagtggaagatttgcctcaaacaatctacctgttaatctctcc
cagttgtctcatggtagctcacatgggcatgcgggaatcccaaatagaggaggtcttaat
gttgttggtaaccctggattcaatagtaacgcaaatggagttggtggttctattcctgga
attctctctacatctgcaggactcagtaatcgtaatagtgttccagggatgggaatatcc
caattgttgggaaattcaggtcctcggataacaaattcgatgggtaacatggttggtgga
ggtaacttggggaggaatattagctctggtgggttgtctattcctggtttgtcttcacga
ctaaatttggcagcaaatagtggatcaggaataaatgttcagggacagaaccgaatgctg
ggtggagtacttcctcaaggatctcaggtcatgtctatgctgggaaactcctatcatact
ggtggtggcccactttctcagaaccatgttcagtcagttaacaatatgatgctcagtgat
cactctaacgacagctctctttttgacatcaacaacgattttcctcagctcacaagtcgt
cctggatctgctggtggcactcaaggacaactaggttctttgaggaaacaaggtttaggt
gtcccacttgcccaacaaacccaagagttcagcattcaaaatgaagactttcctgcccta
cctggatataaaggtgggaattctgattatcctatggatttgcatcagaaagagcaactc
catgacaatgctatgtcaatgatgcactctcaaaacttttctatgggtagatctggtggt
ttcaacttgggggcaacatatacatcgcatcgtccacaacaacaaccacaacatacttca
tccactggtgggctacagggtcttggtcttagacctctaagctctcccaatgcagtttcg
agtattggttatgaccagcttattcagcagtatcagcagcatcaaaatcaatcccagttt
cctgtgcaacagatgtcatcaatcaaccaatttagagattctgagatgaaatcgggacaa
tcagaggcagatcctttttgcttgcttggcttgttagatgtactaaacaggagcaaccct
gaattgacctcacttgctcttggcatagacttgacgacgctaggcttagatttgaattct
actggaaatctctacaagacatttgcgtccccatggaccaatgaaccggcaaagagcgag
gtcgagttcacagtaccaaattgttactacgccacaccacctccaccgttaactcgagca
agtttcaaaaggttctcctatgagttattgttctacacattttacagtatgccaaaagat
gaagcgcagctatttgcagcggatgaactttatgaaagaggttggttttaccacaaggaa
ctcagattatggttcttcagagttggggaacctttagtcaggcaagctacgtatgaaagg
ggaacatacgaatacctcgatccaagttcgttcaaaacaatccgaaaggaacattttgtt
gtcaagtacgagctcatggaaaagagaccaagcttgctgcagcattga
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