Camelina sativa (false flax): 104762224
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Entry
104762224 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14-like
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csat03400
]
104762224
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
104762224
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
104762224
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_30
DEXQc_Suv3
T2SSE
AAA_19
UvrD-helicase
Helicase_PWI
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
104762224
NCBI-ProteinID:
XP_010483778
LinkDB
All DBs
Position
18:17462747..17478858
Genome browser
AA seq
2083 aa
AA seq
DB search
MLVQIPRLTSSLREPFDIDQAYLRRKTILQTLNKPRSSGNRLDESDLARRIVHQWEGASP
EVRQAYKQFTGAVVELIDWEVPSDEFREVAFAAYHLFGKPVEEDSDVDDSKSIAENKLEL
QNLVGHAVSDANVKNVASLARALHSIQPTHQSEEYTNEVDGGAEFGADLVFNLPARFLVE
AVDEKGFQDVESNDTRASFSEGWSDVSNMTKNLSAGKFDLSWLRDACGQMVRETNSQLSR
EELAMAICRFLDSDKPGEEIAGDLLDLVGDSAFETVQDLIMHRKEIVDAIHHGQMVLKSD
KTASNAQSRMPTYGTQVTVQTESAKQIEKLRRKEEKKNKRNAELGLESELSEANFSSLLE
ASEKKTAFEDLIGSGEANSLALALPQGTVRKHLKGYEEVFIPPTPTAQMKPGEKLIEIKE
LDDFAQAAFHGYKSLNRIQSRIFQTVYHTNENILVCAPTGAGKTNIAMISVLHEIKQHFR
DGYLHKNEFKIVYVAPMKALAAEVTSAFSRRLAPLNMVVKELTGDMQLTKTELEETQMIV
TTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGAVIEALVARTLRQVESTQTMIR
IVGLSATLPSYLQVAQFLRVNPDTGLFYFDSSYRPVPLAQQYIGITEHNFAARNVLLNEI
CYKKVVDSIKQGHQAMIFVHSRKDTSKTAEKLVDLARQYENLDLFVNETHPQFQLMKKDV
MKSRNKDVVKLFEAGFGIHHAGMLRSDRTLTERLFSDGLLKVLVCTATLAWGVNLPAHTV
VIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQ
LPIESQFISSLKDNLNAEVVLGTVTNVKEACAWLGYTYLSIRMKLNPLAYGVGWDEIIAD
PSLSLKQRALVADAARSLDKAKMMRFDEKSGNFYCTELGRVASHFYIQYSSVETYNEMLK
RHMNESEIIDMVAHSSEFDNIVVREEEQHELETLARSCCPLEVKGGPSNKHGKISILIQL
YISRGSIDAFSLVSDASYISASLARIMRALFEICLRKGWCEMTLFMLEYCKAVDRQLWPH
QHPLRQFDRDLPFDTLRKLEERGADLDRLYEMEEKDIGALIRYNPGGRLVKQHLGYFPSI
QLEATVSPITRTVLKVDLLITPDFIWKDRFHGAALRWWILIEDTENDYIYHSDLFTLTKR
MARGEPQKLSFTVPIFEPHPPQYYVHAVSDSWLHAESFFTISFHNLTLPEARTSHTELLD
LKPLPVTSLGNKLYESLYKFSHFNPIQTQIFHVLYNTDNNVLVGAPTGSGKTISAELAML
RLFSTQPDMKVVYIAPLKAIVRERMNDWKKHLVAPLGKEMVEMTGDYTPDLVALLSADII
ISTPEKWDGISRNWHTRSYVKKVGLVILDEIHLLGADRGPILEVIVSRMRYISSQTERSV
RFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPIEVHIQGYPGKYYCPRMNSMNKP
AYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLSVSEEDLQMVLSQIT
DQNLRHTLQFGIGLHHAGLNDHDRSAVEELFTNNKIQVLVSTSTLAWGVNLPAHLVIIKG
TEYFDGKTKRYVDFPLTEILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVE
SSLKEKLHDHFNAEIVSGTIGNKEDAVHYLTWTYLFRRLMANPAYYGLEGTQDETVCSYL
SRLVQNTFDDLEDSGCLKVNENSVEPMMLGTIASQYYLCYMTVSMFGSNIGSDTSLEAFL
HILAGASEYDELPVRHNEENYNKTLSDKVRYPVDNNHLDDPHVKANLLFQAHFSQLALPI
SDYNTDLKSVLDQSIRILQAMIDICANSGWLSSSLTCMRLLQMVMQGMWSDQDSSLWMIP
CMNDDLLGSLTARGIHTLHQLLEIPKETLQSVTGNFPASRLSQDLQRFPRIRMNVRLQKK
DSDGKKMPSMLEIRIEKISKRNSSRALAPRFPKVKDEAWWLVLGDTSTSELFAVKRVSFT
GRLTTRMELPPNITSFQNTKLILVSDCYLGFEQEHSIEQPARR
NT seq
6252 nt
NT seq
+upstream
nt +downstream
nt
atgttggttcagattcctcgcttgacaagctctctcagagagccattcgatatcgatcag
gcttaccttcgccgcaaaactatactccaaactcttaataagcctcgcagttctgggaat
cgtcttgatgaatctgaccttgctaggaggatagttcatcaatgggaaggagcttctcca
gaagtgcgacaagcatacaaacagtttactggagctgtagtggagttgattgattgggaa
gttccatctgatgagtttcgtgaggttgcttttgctgcttatcatctgtttggcaagcca
gtggaggaggacagtgatgtagatgatagtaaaagcattgccgaaaacaagttagagttg
caaaatcttgtcggtcatgctgtctcagatgctaatgttaaaaacgtggcctccttagct
cgggcacttcactcaatacagcctacgcatcagtctgaggaatacactaacgaagttgat
gggggagctgagtttggtgccgaccttgttttcaatctaccagctcgttttctggtggaa
gctgttgacgaaaaaggatttcaggatgtggaaagcaatgacactcgtgcgtcattttct
gaaggatggagtgatgtcagcaacatgacaaagaatctaagtgcaggaaaattcgattta
agttggctaagagatgcatgtggacaaatggttagagaaaccaattcacaactttcccgt
gaagaactggctatggctatatgcaggtttctggattccgataaacctggtgaggagata
gctggggatctgctggatcttgttggggatagcgcatttgaaactgttcaagaccttatt
atgcatcggaaagagattgttgatgctattcatcatggtcaaatggttctcaaatctgac
aaaacagcttcaaacgcccaatctcggatgccaacatatggcacacaggttactgtccaa
acagagtctgcaaagcaaattgaaaaacttcggcgtaaagaggaaaagaaaaacaaacga
aatgctgagcttggtttagagagtgaactatcagaggccaatttttcttctttacttgag
gcaagtgaaaagaagactgcatttgaggatttgatcggttctggagaagcgaattctctt
gcattggcccttcctcaaggtactgtaaggaagcacttaaaaggatatgaggaagtattt
atcccgccaacccctactgcacaaatgaaacctggcgagaagctgattgagataaaagag
ttagatgacttcgctcaagctgcttttcatggttacaagtccttaaaccgtattcagagt
cgcatatttcagacagtttaccacaccaatgagaatatattggtgtgtgctccaacagga
gctggtaaaacgaatatagctatgatttctgttctacatgagatcaaacaacacttcagg
gatggctacttgcacaaaaacgagtttaagattgtttatgtagctcctatgaaggcttta
gcggcagaggtcacgtcagcatttagccgtcgtctggctccattaaatatggttgtgaag
gagcttacaggggatatgcaactcacgaagactgaacttgaagagactcagatgatagtg
acaacaccagagaaatgggatgtcattactcgcaaaagcagtgacatgtcattgtcaatg
ctagtaaaactattgatcattgatgaagtgcatcttctgaatgatgacagaggtgcagtg
atagaggccctagttgctcggaccctccgtcaggtggagtcaacacagacaatgataaga
attgtaggcctgtcagccactttgcctagctacctacaggttgctcagtttctacgagtg
aatccagacacgggcctcttctattttgattcgagttatcgcccagttcccttagctcaa
cagtacataggcatcactgagcataactttgctgctagaaacgtattgttaaatgagata
tgctacaaaaaggttgttgattcaattaaacaaggtcatcaagcgatgatttttgttcat
tcccgaaaagacacttcaaaaacagctgagaaactggttgatcttgcccggcaatatgaa
aatctggatttgttcgttaatgagactcatcctcaatttcaactgatgaagaaagacgtt
atgaagtccagaaataaggatgttgtcaaattatttgaagctggcttcggaattcatcat
gcggggatgttgcgatctgatagaacacttacggagaggctgttttctgatggtctctta
aaggttcttgtttgcactgcaactcttgcgtggggtgttaatctgcctgcacacacagtc
gtaattaagggaactcaattgtatgatgccaaggctggtgggtggaaagacttgggaatg
cttgatgtcatgcagatctttggaagggctgggagaccacagtttgataagagtggtgag
ggaattatcatcacatcccatgacaagctagcatactatctccggcttctgacgagtcag
cttcccatagaaagtcagttcataagctccttgaaagataatttaaacgcagaagtggtt
ttgggaactgtgactaatgtaaaggaagcctgtgcttggcttggatatacatatttgtca
attcggatgaagttaaatcctttggcttatggcgttggatgggacgagataattgccgat
ccttctttatcgttgaagcaacgagcccttgtggctgatgctgcacgttcactggacaaa
gctaagatgatgaggttcgacgaaaaaagtggaaatttttactgtaccgagcttggacgt
gttgcaagtcacttctatattcaatattctagtgttgaaacatacaacgaaatgttgaag
cggcacatgaatgaaagcgagataattgatatggttgcccattcttctgaatttgacaat
attgtggtaagagaggaagaacagcatgaacttgagactcttgcacgctcttgctgtcct
ttagaagttaagggaggaccttctaacaaacatggaaaaatctcaattcttattcagttg
tacatatcccgtggatcaattgatgctttttccctggtctctgatgcttcatacattagt
gctagtttagcacgtataatgcgtgctctgtttgagatatgcttgcgcaaaggctggtgt
gagatgactttatttatgttggaatactgcaaggcagttgatcgtcaactatggccccat
cagcatccacttcggcaattcgatagggacctaccttttgatacattaagaaaacttgaa
gagcgaggggctgacttagaccgtctgtatgagatggaggaaaaagacattggagcgttg
attcgttacaatcctgggggaaggttggtcaagcagcatctaggatattttccttcaatt
cagttggaagctactgttagtccaattacacgcactgtattgaaggtggatttgcttata
actccagatttcatatggaaggatcgttttcatggtgctgctcttcgttggtggattctc
attgaggacacagagaatgattatatctaccactcagatcttttcacactaacgaagcgg
atggctagaggggaaccgcagaagctttcttttactgtgccgatatttgaaccacatcca
cctcaatactatgttcatgcggtttctgattcttggttgcatgcagaatctttcttcaca
atctctttccacaatcttacactaccagaggcacgaacgtctcacacagagcttttagac
ttaaaacctctccctgtgacttctcttgggaataaattgtatgaatcgctttacaaattt
tcccattttaatccaatacagactcagatttttcatgtgttatataacacagacaacaat
gttcttgtaggagctccaactggaagtgggaaaactatatctgctgaacttgcaatgtta
cgcctcttcagtacccagcctgatatgaaggttgtttacatagcaccactgaaggctatt
gttcgagaaaggatgaatgattggaaaaagcatcttgttgctccacttggaaaagaaatg
gttgaaatgactggagattacactccagatttagtagctctcttgtccgcagatatcatc
atatctacccctgaaaaatgggatggcattagtcgtaattggcatactcgaagttatgtc
aaaaaggtcggccttgttattttggatgagattcacttgcttggagccgacagaggaccc
atacttgaggttattgtgtctaggatgagatatatatcatcacagacagagcgctccgtc
cggtttgttggtctttctacggctctggcaaatgcaggtgatttggctgactggttgggt
gtcggggagatcggacttttcaattttaaaccaagcgtcaggcctgtaccaattgaagtt
catattcagggttatcctggaaagtattactgcccaaggatgaatagcatgaacaagcca
gcatatgcagccatatgtacccattcacctacaaaacctgttcttatctttgtttcatct
cgtagacagacaaggctaaccgcactggatctaattcagtttgctgcctccgacgaacat
ccgcggcaatttctgagtgtgtcagaggaagacttgcagatggtcctctcacagataact
gaccagaaccttcgacatacattgcaattcggcatcggattgcatcatgcaggtttaaac
gaccacgatagatctgcagtagaagagctgttcacgaacaacaagattcaggttttggtc
tcaacaagtaccttggcatggggagtgaacctaccagctcatttagttattataaaggga
acggaatattttgacgggaaaaccaaaagatatgttgacttccctcttacagagatcttg
caaatgatgggacgtgcagggcgtccgcaatttgaccaacatgggaaagcggtcattctt
gtacatgaacctaaaaaaagcttttacaaaaagttcttgtacgaaccattccccgtagaa
agtagcttgaaagagaagctgcacgatcacttcaatgcagaaatagtatctggaacaata
ggcaacaaagaagatgcagtgcattatcttacatggacgtatctgttccgtagactgatg
gctaatcctgcttactatgggctagaaggtactcaagacgaaacagtctgttcctactta
tcaagattggtgcaaaacacatttgatgatcttgaagacagtggatgcctcaaagtaaat
gaaaatagtgttgagcctatgatgctgggtacaatagcgtcacagtattacctttgctac
atgaccgtgtctatgtttggctctaatataggttctgacacatcgcttgaagcatttttg
catatcttggctggtgcttctgagtatgatgaacttcctgtgcggcacaatgaggaaaat
tacaacaaaacactgtcagataaagttcggtatcccgtggataataaccatctagatgat
cctcatgtcaaagcgaatctgctcttccaggcacatttttctcagttggcactcccaatc
agtgattataacacggatttaaagtcagtactggatcaaagcattcggatcctccaggcc
atgattgatatctgcgcaaacagtggatggctctcaagctcgctgacgtgtatgcgcctt
ttgcaaatggtcatgcagggtatgtggtccgatcaagattcgtcattatggatgatccca
tgcatgaatgatgatcttctaggatctctgaccgcaagaggaattcacacgctgcatcag
ctattagagattccaaaggaaactctacaaagtgtaaccggaaacttccctgcatcaaga
ttatctcaggatctccaacgatttccacggatccgaatgaatgtgagactccagaagaag
gattctgatggcaaaaaaatgccttcaatgctggaaatcagaattgagaagatatcaaag
aggaatagctcaagggcgttggcccctcgatttccaaaggtgaaagacgaagcttggtgg
ttggttcttggtgatacttcaacttccgaactctttgctgtgaagagagtttcgttcact
ggtcgcctgaccacacgtatggagttacctcccaatataacctctttccagaatacgaaa
ctcatcttggtttcggattgttatttggggtttgagcaagaacactccattgaacaacca
gcacggcgctga
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integrated database retrieval system
