Camelina sativa (false flax): 104762319
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Entry
104762319 CDS
T05044
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
csat04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104762319
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104762319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104762319
04121 Ubiquitin system [BR:
csat04121
]
104762319
03400 DNA repair and recombination proteins [BR:
csat03400
]
104762319
Enzymes [BR:
csat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104762319
Spliceosome [BR:
csat03041
]
Complex B
Other components
Prp19 complex
104762319
Complex C
Prp19-CDC5 complex
104762319
Ubiquitin system [BR:
csat04121
]
Ubiquitin ligases (E3)
U-box type E3
104762319
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
104762319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_SCAP
RMC1_N
Beta-prop_DCAF12
Beta-prop_DCAF4
zf-Nse
NBCH_WD40
eIF2A
U-box
PROPPIN
WD40_like
PAS_11
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
104762319
NCBI-ProteinID:
XP_010483893
LinkDB
All DBs
Position
3:1722602..1727197
Genome browser
AA seq
522 aa
AA seq
DB search
MNCAISGEVPEEPVVSKKSGLLYEKRLIERHISDYGKCPVTGEPHTLEDIVPIKTGKIVK
PKALHAASIPGLLGAFQTEWDSLILSNFSLEQQLHTARQELSHALYQHDAACRVIARLKN
ERDESRQLLAEAERQLPAVPEVSTANAALSNGKRAMDDGEQGPDAKKMRLGISAEVITEL
TDCNAALSQQRKKRQIPKTLASIDALEKFTQLSSHPLHKTNKPGIFSMDILHSKDIIATG
GIDTTAVLFDRPSGQILSTLTGHSKKVTSIKFVGDADLVLTASSDKTVRIWGSSEDGNYS
CRHTLKDHSAEVRAVTVHATNKYFVSASLDSTWCFYDLSSGLCLAQVTDGSDEVDYTAAA
FHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHTGAITSVSFSENGYFLATAALDGVRL
WDLRKLKNFRTFDFPDANSVEFDHSGSYLGIAASDIRVFQTASVKAEWNPIKTLPDLSGT
GKATCVKFGPDSKYIAVASMDRNLRIFGLPGDDNTEDSAQDS
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgaattgtgcaatttccggcgaagttccggaagagcctgtggtttcgaagaaatcgggt
ctcctctacgagaagcggcttatcgagaggcatatttcggattatgggaaatgcccggtt
actggtgaaccacatacccttgaggacattgttcccatcaaaactggcaagatcgtaaaa
ccgaaagcattacacgcagctagcatccctggattgcttggagcgttccagactgaatgg
gatagtttgatactttcaaatttttcgctggaacaacaactgcatactgcaaggcaagag
ctaagtcatgctttgtatcagcacgatgctgcttgccgtgtgattgctaggcttaaaaac
gaaagagacgaatcacgccagttgctcgctgaggctgaaaggcagttacctgcagtcccc
gaagtttctacagcgaatgctgctcttagtaatggcaaaagagctatggatgatggtgaa
caggggcctgatgcaaagaaaatgcgtcttggaatttcggctgaagttatcacagaactg
acagattgtaatgctgctctttctcagcaacgtaaaaagagacagatccctaaaacattg
gcttcaattgatgctctggagaagttcacccaactctcaagccacccacttcacaagacc
aacaaacctggcattttttcaatggacatcctacattctaaggatatcattgctacagga
ggaattgatacaactgccgttctctttgatcgtccttcaggacaaattttatcaacgttg
actggtcattcaaagaaggttacaagcattaagtttgttggtgacgctgatcttgtgttg
actgcttcatcagacaagacagtccgtatctggggaagttctgaggatgggaactattca
tgtagacatacattaaaagatcactctgcagaggtgcgagctgtaactgtccacgcaacg
aataaatactttgtgtcggcatctcttgacagtacatggtgcttttatgatctgtcctcc
ggtttatgccttgctcaggtgacagatggttccgatgaggtggattacacggctgctgct
tttcatcccgatggtctcattcttggaactggtaccgctcagtctattgttaagatttgg
gatgtaaaaagtcaggcaaatgtggcaaagtttggtggacacactggggcaatcacctct
gtgtcattctctgagaacggttatttccttgcgactgctgcactagatggtgttaggttg
tgggacttgcgcaagttaaagaacttccgaacatttgactttccagatgcaaactcggtg
gagttcgaccacagtggatcttatcttggcattgctgcttcagatataagagtattccaa
acagctagtgtaaaagcagaatggaacccaatcaagactcttcccgatctgtccggtaca
ggtaaagcaacatgtgttaagtttggacccgactccaaatacatagcagtcgcttcaatg
gaccgtaatctgaggatatttggtttacctggcgatgacaataccgaagattctgcacaa
gattcatga
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