Camelina sativa (false flax): 104764340
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Entry
104764340 CDS
T05044
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104764340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104764340
03009 Ribosome biogenesis [BR:
csat03009
]
104764340
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104764340
Spliceosome [BR:
csat03041
]
Complex A
U1 snRNP components
U1 related factors
104764340
Complex B
104764340
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
Pre-60S particles
Helicases
104764340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
104764340
NCBI-ProteinID:
XP_019096908
UniProt:
A0ABM1RD20
LinkDB
All DBs
Position
19:complement(2689920..2696254)
Genome browser
AA seq
1108 aa
AA seq
DB search
MATTEATPASAGPRYAPEDPTLPKPWKGLVDGSTGILYYWNPETNVTQYERPSAPPPPLQ
AGAPPHSATTPKLAQIPIPSSGQGHQAQHEQAKHVGHVSQQHGLQQQPQQFPSQHVRPQL
MHQQQQHPGQQMSQQSGQQFPQQQSQSMVSQPHGHPSVQSYQPTSQQQVMQNQHSQMPQQ
LSHQYAHPQQHYMGYRPHMQPQGLQNSHQAPQGGHQGQQFSSQQEYNSLAPKRDGDEFHG
GKKAGFSQPHLPNSEGSPSQNAPFEANAASQRTNANLSMAQKYNGPQANMQHPVAVTQFK
QPEANLIHHQLGPRPQNQMDPTMLHPKSHTSPFQSNKTYENNVQSRPGNDSYVNKRMEGP
VRGAQPHHPAAMPKDIRIGGGPPANADPAMGQTGHGTYGHAGPAFPQKSLARPHFVTSPD
VPHLSPVESYRKQHEVTTTGENIPAPYITFEASGLPSEILRELLSAGFPSPTPIQAQTWP
IALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEA
LRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVL
DEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDE
LAANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCSTKRLCDHLARSVGRHFGAV
VIHGDKSQGERDWVLGQFRTGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRI
GRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIAMRGGGGGGPGYSQD
RRGMANRFDSGGGGSRWDSAGGFGGRGGGFGGREGGFGGREGGFGGREGGFGGREGRFGG
REAGFDGRGGGFGTRDDSFGRGGNRGRGFTGPDAGRMNVGGRGGFSRFGNNNMDGGGFGR
GGGRGFGRGVGRFDNRRGRSRSRSPDLVRPRRRSLSYSRSRSRSRSYSRSRSRSWSRSRS
RSPRHSRDRGGHKRSRSYSRSPSPVYERRDRQPRVSGFDIKPPIESVVKPDMNAVETVVP
TAMSERQGNGVVESEVEAALVRPVVDEP
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atggccacaacagaagctactccagcttctgctggtccaagatatgctccagaggaccca
actcttcccaaaccatggaagggacttgttgatggaagcactggaattttgtattactgg
aatcctgaaacgaatgtcactcaatatgaaagaccttctgcgcctcctccacctttgcag
gctggtgctcctccgcactctgccacaacgcccaagctcgctcaaattcctataccctct
tcaggacaaggtcaccaagctcaacacgaacaagcaaaacatgttggtcacgtgtctcaa
cagcatggtttacaacaacagccacagcaatttccatcccaacatgtaagaccccaattg
atgcaccagcagcagcagcatccgggccagcaaatgtctcaacaatcaggtcaacagttt
ccccaacaacagagccagtcaatggtgtcgcagccacatggacatccttctgtacagtct
tatcagccaacttcgcagcagcaagtcatgcagaatcagcattcacaaatgcctcagcag
ctgagccatcagtatgcacatccacaacaacattacatgggttatcggcctcacatgcaa
ccacaagggcttcaaaattcacatcaggcacctcaaggtggtcaccagggtcagcagttt
tctagccagcaagagtacaactcgttggctccaaagagggatggggatgagttccatggg
ggtaagaaagctgggttttctcaaccccatttgccaaattctgaaggttcaccatctcaa
aatgccccctttgaagccaatgcagcatcacaaagaacaaatgcaaacttgtctatggct
cagaaatacaatggacctcaagcaaacatgcaacatcctgttgcagtcacacagtttaaa
cagccagaggctaacctgattcaccaccagcttggacctaggcctcaaaatcaaatggac
ccgacaatgttgcacccgaagtctcatacttcccctttccaatcaaataaaacatatgag
aataatgtacaatctagacctgggaatgactcttatgttaacaaaagaatggaagggccg
gttaggggtgcccaaccacatcatcctgctgcaatgcctaaggatataaggataggtggt
ggtccacctgcaaatgctgatcctgccatggggcaaacagggcatggaacatatggacac
gctggtccagcttttccacagaaatccttggcgaggcctcattttgtcacatctcctgat
gttcctcatctctcacccgttgaaagctaccggaaacaacatgaagtcacaacaactggc
gagaacattccagcaccatacattacatttgaagctagtggtctcccttctgaaatcctt
agagagttgctttctgctggatttccatcaccaacaccgatccaggctcaaacatggcca
attgctctgcagagcagggatatagttgcaattgcaaaaactggttctggtaaaactttg
ggatacttgatccctgccttcattcttctacggcactgtcgtaacgactcccgaaatggc
cccacagttttgatcctagctcctactcgggagctagccacacaaatacaagatgaagcc
cttcgcttcgggcggtcttccaggatatcatgcacttgtttgtatggtggagctccaaag
ggtcctcaattgaaagagttggaacgaggagctgatattgtggtggcaactcctgggcgt
ctaaatgatatactggagatgaagatgattgatttccagcaggtttcccttcttgtgctt
gacgaagcggaccgaatgcttgacatgggttttgaaccccaaatccgtaagattgtgaat
gaaatacctcctcggagacagactcttatgtacacagcaacttggccaaaagaagtaaga
aaaattgcaagtgatcttcttgtgaaccctgtccaagttaatataggcagggtagatgag
ttggctgctaacaaagcgataacacagtatgttgaagtagtccctcaaatggagaaagag
agacgtttggagcaaatccttaggtcgcaagaaagaggttcaaaagttataatattttgc
tctacaaagaggctttgtgaccatcttgcacgtagtgtcggacgtcattttggggctgtt
gtgatccatggagacaagtctcaaggtgagagagattgggtacttggccagttccgaacc
gggaaatcttgtgtattaatagctactgatgttgccgcccggggactcgatataaaagac
ataagagttgtgatcaactacgattttccaactggcgttgaagactatgtccaccgtatt
gggagaaccggtcgagccggtgcaactggagtggcattcactttcttcacagagcaagat
tggaaatacgcgcctgatttgatcaaagtcctcgaaggagcaaaccagcaagtaccgcct
caagtaagggacattgcaatgcgtggtggtggtggtggtggtcctggttatagccaggat
cgaagaggtatggctaaccggtttgactctggtggtggtggtagccgttgggattctgct
ggagggtttggtggccgtggtggtgggtttggtggccgtgagggtgggtttggtgggcgt
gaaggtgggtttggtgggcgtgaaggtgggtttggtggccgtgagggtaggtttggtggc
cgtgaagctgggtttgatggccgtggtggcggatttggaaccagagatgactcatttgga
cgtggcgggaatcgtggtcggggtttcactggtcctgatgctggtcgtatgaatgttggt
ggtagaggcggatttagtcggtttggcaataataatatggatggcggaggctttggtcgt
ggtggtggtagaggctttggtcgtggtgttggaaggtttgacaacagaagaggtagaagt
cgtagcagaagtcctgatttggttcggccaaggcgacgtagcctgagctatagccggagt
agaagccggagccggagctacagtcgtagtcgtagcaggagttggtcacgttcaaggagt
cgcagccctagacatagccgtgaccgtggtggtcataagcggagcagaagctatagccgt
agtcctagtccggtttatgaaagacgagacagacagccacgagtttctgggtttgatatt
aaaccaccaattgagtctgtagtgaaaccggacatgaacgcggttgaaaccgtggttcct
acagccatgtctgagagacaagggaatggggttgttgaatccgaggtagaagcggcttta
gtacgaccagtggttgatgaaccctaa
DBGET
integrated database retrieval system
