Camelina sativa (false flax): 104764575
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Entry
104764575 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH2-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104764575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104764575
03012 Translation factors [BR:
csat03012
]
104764575
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104764575
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104764575
Translation factors [BR:
csat03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104764575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
OB_NTP_bind
R3H
HA2_C
Ank_2
HA2_N
FXR_C1
Ank_5
AAA_19
nSTAND3
AAA_22
ATPase
PhoH
AAA_7
Cytomega_UL84
Motif
Other DBs
NCBI-GeneID:
104764575
NCBI-ProteinID:
XP_010486434
LinkDB
All DBs
Position
3:2735235..2743010
Genome browser
AA seq
1536 aa
AA seq
DB search
MVKKKKSTKHITLCETTEAWATKLLEEFRASGNDSYAFEQHLTNGERGIIHQMCRRMGLQ
SKSHGSGEERRLTLFKSKAGSGDGISKSESKHKYETRNHEGREGDGFSNSYSKHKYETRF
QKGGAPRKKMIPQEKLKCVSFPPEAKAVLHDLFTRFPPCDGDTTGTLLGVYTGNARNNWK
DDFFLKPQLTKNDIKKNAASLNSRLETDKCFRQIFEARAKLPITSFRDAIISAVESNQVV
LIAGETGCGKTTQVPQYLLDHMWYSKQEACKIICTQPRRISAISVSDRISWERGETIGKT
VGYKVRLQSEGGRGSSVVFCTNGILLRVLIGKGVNSCVPDITHIIVDEIHERDSYSDFML
MILRDLLPSNPHLRLILMSATLDAERFSEYFGGCPVVRVPGFTHPVRTFFLEDALSVLIS
DKNNHLLSADSNLPSNKHDFKDEEKVALDEAIDLAWTNDEFDCLLDLISSEGSHEVYNYQ
NLTTGLTPLMVFAGKGRVSDVCKLLSFGANCTLKSKEGITALEVAEKENQIETAQIIREH
ADNIQSNSQQAQDLLDKYMATMKPEEVDVGLIVKLMKKICSDSKDGAILVFLPGWEEIRK
TKEKLLENPHFADSGKFSILCLHSRVPAEEQKKVFDRPRRGCRKIVLATNIAESAVTIDD
VVYVIDSGRMKEKSYDPFNDVSTLQSSWVSKANAKQRAGRAGRCQPGVCYHLYSKLREAS
LPEYRVPEVKRMPVDELCLQVKMLDPNCDVNDFLQKLMDPPVAQSIANALIILKDIGALT
PQEELTELGQKFGQLPVHPRISKMIYFAILVNCLDPALILACAADEKDPFIMPLLPGDRK
KANAAKHELASLYGDHSDHLATVAAFQCWKNAKESGRANEFCSKYFISQIVMKRLDDLCR
KLQGELKRHGVIPSSSNCSLNAHDPGILRAVIAVGLYPMLGRMCPVCKNQTRSIVETITG
AKVRVPSLSNNVDMSSTKYDEALIVFDEITRGDWGVQIRSCTVLPTLPLLLFSREIAVSP
TESYDADKSDDEEDHVVENVGDTMDIDKEGVRAAEKVLLAPENSVKVIVDRWLPFKVTAL
EIAQMYILRERLMASILFKVKHPKENMPPHLGASMYAIACILSYDSLARSSVQTVAVQPI
ASVPNATSPKDDIPSANPNELQEHDPKTTPMGSKLANKLGLGNMEESVPSNLADRNEQPD
PNTARVEDVSAATQQKKIQSESKRCKSPNNVDLGNIEENLGSMKVNTPSDLANGNEQKDP
KSVCKLDLGREKESIPSNLAHGNEQRDPNTSQTEDASAAKQPEKKRSRSKRRKSGNDMDL
GMMETSKPSDLANGNELTEPKSANNLDLGNMEDNIPSDLAKDNEQTELNLPNKSNYGNME
ESLPFNLANVDEQPDPSIMEAASSAKQPKNKRSRSKKHKSDNKLDLGNIEENTPSDLANG
NERKEPKSVRRLDPGKEKESIPLNLVSGNEEPDSNTAPAAKKPKRKKRKLANNFDSGNSM
EEKVPSTDGQQEQCGEKTERKSGNKSEKVSVPSNPV
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagaagaagaagagtacgaaacatattactctctgcgaaaccactgaggcttgg
gccactaagctccttgaggagtttcgcgcctccgggaacgattcttacgcctttgagcag
catcttacaaatggcgaacgtggcattatccatcagatgtgccgacggatgggtctccaa
tcaaaaagtcacgggagtggggaagaaaggcgtctaactcttttcaaaagtaaagctggg
agtggagacggcatttcaaagtcagagagcaagcataagtatgaaaccagaaatcatgaa
ggaagagaaggagatggcttttcaaattcatacagtaagcataagtatgaaaccagattt
cagaaaggaggcgctccaagaaagaagatgataccccaagagaagctcaaatgtgtgtca
tttccacctgaggcaaaagctgttctccacgacttatttactcgctttccaccttgtgat
ggcgatactactgggacattattgggcgtatatactggaaacgcccgcaataattggaaa
gatgacttcttcctgaaacctcagttgacaaaaaacgatattaaaaagaacgcggcatct
ctgaattctagactggaaacagataaatgttttcgacagatctttgaagcacgagcaaag
cttcccatcacatcttttcgcgacgccattatatctgcagtggaatccaatcaggttgtt
cttattgctggtgaaactggttgtgggaaaactactcaggtgcctcaatatcttctagat
catatgtggtatagtaagcaagaagcgtgcaaaatcatttgcacccaaccacgtcgtatc
tcagctatttcagtttctgatagaatatcttgggaaagaggtgaaactattgggaaaacc
gtcggctacaaggttcgactgcaaagtgaaggtggaagagggtcatcggttgttttctgc
acaaatggcattctattgagggtgcttataggcaaaggcgtgaacagctgtgttcctgat
ataactcacattattgtggatgaaatccatgaaagggactcctactctgatttcatgtta
atgattttaagagacttgcttccatctaatcctcatctccgactgattttaatgagtgct
actcttgatgctgagaggttttcggaatatttcggaggttgcccggttgtccgagtgcct
ggattcactcatccagtccgaaccttttttctggaagatgcactttctgtcctgatatca
gacaagaataatcatctactttctgctgactcgaacttaccaagtaacaagcatgatttt
aaagatgaagaaaaagttgctttagacgaagcaatagacttggcatggacaaatgatgag
tttgattgtctcttagatctaatttcttctgaaggaagtcatgaggtttacaattaccag
aatttaacgaccgggctaacaccacttatggtctttgctggaaagggcagggttagcgat
gtctgcaagctcctttcatttggcgctaactgtacactgaagtccaaagaaggtataacc
gcattagaagtggctgaaaaagagaatcaaattgaaactgctcaaataatcagggaacat
gcagataacatccagtccaattctcagcaagcacaagacttacttgataagtatatggcg
acaatgaaaccagaagaagtagatgtgggtcttatagtgaagttaatgaagaaaatatgc
agcgattcaaaagatggtgccattcttgtttttctacctgggtgggaggaaatcaggaaa
acaaaagagaaattgcttgagaatccccattttgcagatagtggtaaattcagcattcta
tgtcttcactcacgggttccggctgaggaacagaagaaagtttttgatcgcccccgtcga
ggttgtcgcaaaattgtgcttgcgaccaatattgctgaatcagcagttactatcgatgat
gtggtttatgtgatagatagcggccggatgaaggaaaagagttatgacccttttaatgat
gtgtcaacgctccaatcttcttgggtatcaaaagcaaatgcaaaacagagggctggtcga
gcaggccgttgtcaaccaggcgtttgttatcatctatattctaaactccgggaagcgtct
ttgcccgaatatagagttcctgaagttaagagaatgccagtggatgaactctgcttgcag
gttaagatgctggatccgaattgcgacgtaaatgatttccttcagaaattgatggacccg
cctgttgctcaaagtattgcaaatgccttaatcatccttaaagatattggagcgttgact
cctcaagaagagctgacagaacttggacagaaatttggtcagcttccagttcatcctcgg
attagcaagatgatttatttcgccatattagtgaactgtttggatccagcacttattctg
gcatgtgcagccgacgagaaggatccgtttatcatgcccttgttgccaggtgatagaaaa
aaagctaatgccgcaaaacatgaacttgcatcactttatggagaccatagtgatcatctt
gcaactgtcgcggcttttcagtgctggaaaaatgcaaaagaaagtggtcgagctaacgag
ttttgttcgaagtacttcatctcccaaattgtcatgaagaggctggatgatctgtgtcgc
aagcttcagggagaacttaaaagacatggggtcatccctagcagttcaaactgtagcctg
aatgctcatgatccgggtattctccgtgctgttatagcagtaggattgtaccctatgttg
ggaaggatgtgcccagtttgcaagaaccagacaagatctatagtagagactattactgga
gccaaagttcgtgtgccctcgctatcaaacaatgtcgacatgtcctctaccaagtatgac
gaagctttaattgtttttgatgagattactcgaggagattggggtgtgcagataagaagc
tgcactgttcttcccactttacctttgttacttttttcaagagagatagccgtgtctcct
acagagagctatgatgctgataagagtgacgacgaggaagaccacgtagtagaaaatgta
ggagacacgatggacatagataaagaaggtgttagggctgcagagaaagtattgcttgcg
cccgaaaattcagtaaaggtaatagtggatcggtggctgcctttcaaggttacagctctt
gaaattgctcaaatgtacatcttgagagagaggctaatggcgtccatattgttcaaggtt
aaacatccaaaggaaaatatgccgcctcatctcggtgcttctatgtatgcaatagcttgt
attctctcatatgatagcctcgctcgatcttcggttcaaactgtagctgtgcaacctatt
gcttcagtgccaaatgcaacgagtcccaaagatgacataccttccgctaaccccaatgag
cttcaggagcatgacccgaaaactactccaatggggtcaaagctagccaacaagttgggt
ttgggtaatatggaagagagcgtgccttcaaatctcgctgataggaatgagcaacctgac
ccaaacactgctcgagtggaagatgtttcagcggctacacaacaaaagaagatacagtca
gagtccaaaaggtgcaagtcgcccaacaatgtggatttggggaacattgaagagaacttg
gggagcatgaaagtgaacactccttctgatctggctaatgggaatgagcaaaaagaccct
aagtcagtctgcaagttggatctgggtagggagaaagagagcattccttctaatctcgcc
catggaaacgagcaacgtgacccaaacacttctcaaacggaagatgcttcagcggctaag
caaccagaaaagaagcgatcaaggtccaaaagacgcaaatcaggcaacgatatggatttg
gggatgatggaaactagcaagccttccgatctggcaaatgggaatgagctaacagagcct
aagtcagccaacaacttggatttagggaatatggaagacaacataccttctgatctggct
aaggataatgagcaaacggagcttaatctacctaacaaatctaattatggtaacatggaa
gagagcttgcctttcaatcttgctaatgtggatgaacaacctgacccaagcataatggaa
gctgcttcatcggctaaacaaccaaaaaataagcgatcaaggtccaaaaagcacaaatcc
gacaacaagttggatttgggaaacattgaagagaacacgccttctgatctggctaatggg
aatgagcgaaaagagcctaagtcagtcaggcggttggatccgggcaaagagaaagagagc
attccactgaatcttgtcagtggtaatgaggaacctgactcaaacactgctccagcggct
aagaaaccaaaaaggaaaaaacgcaaattagctaacaactttgattcgggtaacagtatg
gaagagaaagtaccttctactgatgggcaacaagaacaatgcggtgaaaaaacagagcga
aagtcagggaacaagtcagaaaaagtgagcgtaccttccaatccagtgtga
DBGET
integrated database retrieval system
