Camelina sativa (false flax): 104764955
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Entry
104764955 CDS
T05044
Name
(RefSeq) pre-mRNA-splicing factor prp12-like
KO
K12830
splicing factor 3B subunit 3
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104764955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104764955
03041 Spliceosome [BR:
csat03041
]
104764955
03036 Chromosome and associated proteins [BR:
csat03036
]
104764955
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
104764955
Spliceosome [BR:
csat03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104764955
Complex B
104764955
Complex C
U2 SnRNP specific factors
104764955
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
104764955
TFTC complex
104764955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
104764955
NCBI-ProteinID:
XP_010486871
UniProt:
A0ABM0XJG2
LinkDB
All DBs
Position
19:5430251..5438200
Genome browser
AA seq
1372 aa
AA seq
DB search
MAAPEDESSAHSQSSSATEAAPTPPPSSSPSSVGDHYLAKCILRPSVVLQVAYGYFRSRS
SRDIVFGKETCIELVIIGEDGIVESVCEQNVFGTIKDLAVIPQSNKLYSNSFQMGKDLLA
VLSDSGKLSFLSFSNEMHRFSPIQHVQLSSPGNSRIQLGRMLTIDSSGLFLAVSAYHDRF
DLFSLSTSSMGDIIHKRISYPSEDGGGNGSSVQAISGTIWSMCFISKDFHESKEYDPVLA
IVTNRKGSLMNELVLFRWNVKEESMSIISEYVEPGALAHSIVEVPRSCGFAFLFRVGDAL
LMDLRDPQNPCCLFRTSLDLVPASLVEEHFVEESCRVQDGDDEGLFNVAACALLELRDYD
PMFIDSESDIGKLSSKHVSSWTWEPENNLNPRMIICLDDGELFMFELIYEDDGVKVNLSE
CLYKGLPCKEILWVEGGFLATFAEMADGTVFKLGTEKLHWMSSIQNIAPILDFSVMDDQN
EKRDQIFACCGVTPEGSLRIIRSGINVEKLLKTAPVYQGITGTWTVKMKLTDVYHSFLVL
SFVEETRVLSVGLSFKDVTDSVGFQSDVCTLACGLVADGLLVQIHQDAIRLCMPTTDAHS
DGIPVSLPFFSSWFPENVSISLGAVGQNLIVVSTSNPCFLSILGIKSLSSQCCEIYEIQR
VTLQYEVSCISVPQKHIGKKRSRASSLDNSCKAAIPSGMEQGYTFVIGTHKPSVEVLSFS
EDGVGVRVLASGLVSLTNTMGTVISGCIPQDVRLVLVDQLYVLSGLRNGMLLRFEWPPFS
HSSGFNCPDYFSYSKEEMDIVVGKKDNLPINLLLIATRRIGITPVFLVPFSDTLDSDIIA
LSDRPWLLQTARQSLSYTSISFQPSTHATPVCSSECPQGILFVSENCLHLVEMVHSERLN
AQKFHLGGTPRKVIYHSESKLLIVMRTDLYDTCTSDICCVDPLSGSILSSYKLKPGEAGK
SMELVRVGNEHVLVVGTSLSSGPAILPSGEAESTKGRLIILCLEHTQNSDSGSMTICSKA
GSSSQRTSPFRDVVGYPTEQLSNSSLCSSPDDNSYDGIKLDEAETWQFRLASATTWPGMV
LAICPYLDHYFLASAGNAFYVCGFPNDSPERMKRFAVGRTRFMITSLRTYFTRIVVGDCR
DGVLFYSYHEDSKKLHQIYCDPAQRLVADCFLMDANSVAVSDRKGSIAILSCKDHADFEY
SSPESNLNLNCAYYMGEIAMAIKKGCNIYKLPADDGLQSYGLSKSIGTADDTIIAGTLLG
SIFVFAPITSEEYELLEAVQAKLGIHPLTAPVLGNDHKEFRGRENPYQATKILDGDMLAQ
FLELTNRQQESVLSTPPPSPSTSKASSKQRSSPPLMLHQVVQLLERVHYALH
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggcggctccggaggatgaatcttccgctcactctcaatcatcctctgccaccgaggcg
gctcctacgcctcctccttcctcttccccttcttccgtcggggatcattacctcgctaag
tgtatcctccgccctagcgtcgttctccaggttgcttatggctacttccgctcccgttcc
tcccgcgacatagttttcggcaaggagacatgcatagaattggtgattattggtgaagat
ggtattgttgaatcggtgtgtgaacagaatgtctttggaacaattaaggatttggctgtc
atacctcagagtaataaactatattcaaatagttttcagatgggaaaagaccttctcgct
gttctttctgattctggaaagctgtcatttctctcatttagcaatgaaatgcacaggttc
tcgcccatacaacatgttcaactttcaagtccaggtaactcaaggattcaacttggaaga
atgctcacaatagattccagtggtctctttcttgctgtcagtgcgtatcatgatcgtttt
gatctgttttccctctcaacatcgtctatgggtgatattattcataagaggatttcttat
ccttctgaagacggaggagggaatggcagttctgtacaagcaatatctggtactatttgg
agcatgtgtttcatttctaaagattttcatgaatccaaggagtatgatcctgttcttgcc
attgttacaaataggaaagggtctctcatgaatgagctggttttgtttagatggaatgtc
aaagaggaatccatgtctataatatcagaatatgttgaacctggggctctggcacatagt
attgtcgaagttcctcgctcctgtggatttgcctttctctttagggttggtgatgcgctc
ttaatggatcttagagatcctcaaaacccttgctgtctgtttaggacatccttagatctt
gttcccgcttcattagtggaagagcattttgttgaagagtcgtgtcgagtacaagatggt
gacgatgagggtctttttaatgttgctgcatgtgctttgttagagctcagggattatgat
cccatgttcatagattctgaaagtgacattgggaagttgagttctaagcatgtctcttca
tggacttgggagccggaaaataatcttaaccctcggatgattatttgcttagatgatggt
gaacttttcatgtttgaactcatatatgaggatgatggggttaaagtaaatctatcagaa
tgtttatacaaaggtttaccatgcaaggaaattttatgggtcgaaggtgggttcttggct
acgtttgcggaaatggcagatggaacggttttcaaattgggaactgaaaagctacattgg
atgagttccatacaaaatattgctccgatcttggatttttcggttatggatgaccagaat
gagaaacgagatcaaatatttgcttgctgtggtgtaacccctgaaggctctttgagaatt
attcgtagtggcattaatgtagaaaaacttctgaaaaccgctcccgtttatcaaggaata
actggtacttggactgttaaaatgaagcttaccgatgtataccattcatttcttgttttg
tcatttgttgaagagaccagggttttatcagttggattaagttttaaagatgtcactgat
tcagttggtttccagtctgatgtttgtaccttggcatgtgggcttgttgctgatggtttg
ttggttcagattcaccaagatgcaataaggctttgcatgcccaccacggatgctcattct
gatggtattcctgtttctttaccatttttctcgtcgtggttcccagaaaatgtcagtatc
agcttgggtgcagttggtcaaaatttgatagttgtctctacgtctaacccttgtttcttg
tctattcttgggatcaaatcactatcatctcagtgctgtgaaatctacgaaattcagcga
gtaacattgcagtatgaagtttcctgcatctcagttcctcaaaaacatattggaaagaag
agatcccgtgcttcttccttggataatagttgcaaagctgcgattccttctggtatggag
caaggctatacgtttgtgattggcacacataagccttctgttgaggtcctctccttctca
gaagatggtgttggtgtacgagtccttgcttctgggttggtatcgctaacaaatacaatg
ggaactgttattagtggatgcattcctcaagatgtaagactcgtgttagttgatcaactt
tatgtcctttctgggttgagaaatgggatgctgctccgttttgaatggcctcctttttca
cattcatccgggtttaattgtccagattattttagttactccaaagaagagatggacatt
gttgtggggaaaaaagacaatttacccatcaaccttctgttaattgccacccgacgcatt
ggcatcacacctgttttcttggttccattcagtgatacactggattcagacataatagct
cttagtgataggccatggttgttacaaacagctcgacaaagcctttcatatacttccatc
tcattccaaccttctactcatgcaactcctgtatgttcgtctgaatgccctcaaggaatt
ctttttgtttcagagaactgtttacatctggtggagatggtgcacagcgagcggcttaat
gcgcaaaagtttcaccttggaggcaccccgcgaaaggttatctaccatagtgaaagcaaa
ctattgattgtgatgagaacagatctgtatgatacgtgtacgtctgatatatgctgtgtg
gacccgctcagtgggtcaatcttatcatcttacaagctcaaacctggagaagctggaaag
tcaatggagcttgtacgtgtgggaaatgagcatgtccttgtggttgggacgagtttgtct
tctggtcctgctatactacccagtggtgaagccgaaagtacaaaaggacgattaatcatt
ctctgcttagaacacactcaaaactcggatagtggctcaatgacaatttgttcaaaggct
ggttcgtcttcccaacgtacatcaccttttcgtgatgttgtgggatacccaacagaacaa
ttatcaaacagtagtctttgtagcagtccagatgataacagctatgatggaatcaaactt
gatgaagctgaaacatggcagttcagattggcctctgcaaccacttggccgggtatggta
cttgcaatctgtccataccttgatcattacttcctcgcatctgctggcaatgctttctat
gtatgtggttttccgaacgatagtcctgagagaatgaagaggtttgcggtcggaaggact
cgttttatgataacatctctgcgcacatacttcactagaattgtcgttggtgattgccgt
gatggtgttctattttattcttatcatgaggactcgaagaaacttcaccaaatatattgt
gatccagcgcagaggttagttgctgactgctttctaatggatgccaattctgttgctgta
tctgatcgcaagggaagtatagcaatcttgtcttgcaaagatcatgcagactttgaatat
tcaagtccggagtccaacctgaatctaaactgtgcttattacatgggcgagattgccatg
gctatcaaaaagggttgcaacatctataaacttccagctgatgatggactgcagagttat
ggtcttagtaaaagtattggcacagctgatgacactatcatagcaggcacgctattggga
agtatatttgtatttgctcctattacaagtgaggaatatgagctcttagaagctgtccaa
gcgaagctcgggatccatccgcttactgctcctgttcttggtaatgatcataaggagttc
cgaggtcgagagaatccgtaccaagcaacaaagatattggatggtgacatgcttgctcag
ttcttggagcttacaaatagacagcaagagtcagttttatcgacacctccgccatcacca
agtacatcaaaagcaagttcaaaacaacgttcttctccgcctctcatgctacaccaagtt
gtgcagttgcttgagcgtgtccattacgctttacactag
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integrated database retrieval system
