Camelina sativa (false flax): 104765106
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Entry
104765106 CDS
T05044
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104765106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104765106
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104765106
mRNA degradation factors
5'-3' decay
Decapping complex
104765106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Beta-prop_TEP1_C
Sec3_CC
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
104765106
NCBI-ProteinID:
XP_019096367
LinkDB
All DBs
Position
19:6068372..6075162
Genome browser
AA seq
1391 aa
AA seq
DB search
MTSSPGNTNPHNPPPPPFDLITIFKPSSNPYPAPPSSFPPPAGPFLHSQYNQQLYAPPST
SAQPSPVTLTQQDVSSSSSATNLLPQRTLSYPTPPLNPQSPRVNHNPGTHILALLNNNKG
GAVANQEPPHQLPVVTHSEIARSFPGGSGPIRVPSCKLPKGRRLVGEHAVYDVDVRLQGE
IQPQLEVTPITKYGSDPQLVVGRQIAVNKVYICYGLKGGNIRVLNIHSALRSLFRGHSQR
VTDMAFFAEDVDLLASVSLDGKVFVWKISEGSERDDQPQITGKIVCALQILGEQDTKHPR
VCWHCHKQVFDHFVSLDGKVFVWKISEGSERDDQPQITGKIVCALQILGEQDTKHPRVCW
HCHKQEILVVSIGRHVLRIDTTKVGRGEVFSAEAPLQCALDKLIDGVQIVGKHDGEVTDL
SMCQWMTTRLVSSSVDGSVKIWQDNKAQPLVVLRPHDGYPVSSATFVTSPERPDHIILIT
GGPLNREMKIWVSAGEEGWLLPADAESWRCTQTLELKSSTEPRAEEAFFNQVIALSEAGL
LLLANAKRNALYAVHLDYGYSPVDSRMDYLSEFTVTMPILSFIGTNDPPEEPIVKVYCVQ
TLAIQQYTLDLCLCLPPPTENVGFEKSDSSVSREANLFESMFEPSGLKATKLPSVNSVPK
PSILVNRSESANTLNFPAGSASAETTSPAIAPPNGEPKTSGLPSETSDAGAPSPQHSLSP
RLSSKLSGYHTPSDCFVDRQNDDVGENSLNVSSVDESSRSKDMNVKPDDDMSGIRSPSAF
FKHPTHLVTPSEILMGVSSTEASVTTEDKRDRNADIQDVNNDARGTEVEVKEVSEARSTQ
NGEMNYHEETANHTSESREQIFCSQASNLTARVRHPITEETDSVAYGQPLQVGDERGLDS
RDVSANLPKSDSSSGLPQLVATNSKGKKQKAKNSQGPSLSSSNVANLAESVSEQCERLSH
PMTDSIPQLLAMQETMNQIMVSQKEMQRQLSNAVTGPIVKEGKRLEVAIGRMIEKSSKSN
ADALLARFQEEAVKNEKALRDHAQQIVNATSNFMSKELNAMFEKTVKKEFATVGPSLARA
ATPVIEKTVSSAITESFQRGIGDKAVNQLDKSVITKLETTIARQIQAQFQTSGRQALQEG
LRSSLESSVIPSFERACKAMFVQVDSTFQKGMAEHTSAAQQRFDSGHSQLAHTLKETISS
ASSVTQALNHELAESQRNRLALAAAGASSGGSNPLVTQLSNGPLGALLEKVEVPMDPTAE
LSRLISERKYEESFTSALQRSDVSIVSWLCSQVDLRGLLAMNPLPLSQGVLLSLLQQLSC
DISKDTSRKLGWMTDVVAAINPSDQMIAVHARPIFEQVYQILHHQRNAPGSDITAVRLIM
HVINSMLMSCK
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcttcacccggtaatactaaccctcacaatcctcctcctcctccgttcgatctc
attactatcttcaaaccttcatcgaacccttatccggcgccgccgtcatcttttcctcca
ccggcgggtccttttcttcacagccagtacaatcagcaactctacgcgccgccgagtacc
tcagcccaaccatcgccggtgactctgacgcaacaggatgtgtcttcctcttcctccgcg
actaacttgcttccgcagagaacgctgtcttatcccacgccacctctcaatccccaatct
ccccgtgtcaatcacaatcccggaacgcacatcctcgctctccttaataacaacaaagga
ggcgccgtggctaaccaagagcctccgcatcagcttccggtagtgactcacagcgagatc
gctcggtcttttcctggcggttcgggtcctatccgtgttcccagctgtaagctgcctaag
ggaagacggttggttggtgaacacgctgtctacgatgtggacgtgaggttacagggagag
attcagccgcagttggaggtgactccgattactaaatacgggtcggatcctcagcttgta
gtgggtcggcaaatcgccgtgaataaggtctacatatgctatggattgaaaggaggaaac
attagggttcttaatatacatagtgctttgaggtctttgttcagaggccattctcagaga
gtgacggacatggctttctttgccgaagatgttgatctcttggctagtgttagtctagat
ggaaaagttttcgtgtggaaaatttctgagggatctgagagagatgatcaaccccagata
actggaaagatagtttgtgctcttcagatactaggagagcaagacaccaaacatccacgt
gtttgttggcactgccacaaacaggtatttgatcactttgttagtctagatggaaaagtt
ttcgtgtggaaaatttctgagggatctgagagagatgatcaaccccagataactggaaag
atagtttgtgctcttcagatactaggagagcaagacaccaaacatccacgtgtttgttgg
cactgccacaaacaggaaattttggtagtttctattggtagacatgtgcttcgtattgat
actaccaaagttggcagaggtgaagtattctctgctgaggcccctctccagtgtgccctt
gataaactgattgatggtgttcagattgtgggcaagcatgatggggaagttacagatttg
tcaatgtgccaatggatgaccacgcgcctggtttcttcttctgttgatggctcggttaag
atatggcaagataataaggcacaaccactcgtagttttgagacctcatgatggatatcca
gtcagctcagccacatttgtgacatcccctgaaagacctgatcacatcatacttatcacg
gggggtcctctaaatcgagaaatgaaaatctgggtctctgctggggaagaagggtggctt
ttaccagctgatgctgaatcatggaggtgtacccagacacttgaattgaaaagttcaact
gagccacgggctgaagaggcattttttaaccaagtaatagcattatctgaagcaggcttg
cttttacttgcaaacgcaaaaaggaacgccttatatgctgtgcatttggactatggttat
tctccagttgattctcggatggattacctgtcagagtttacagtcactatgcccatattg
agttttattgggacaaatgatcctccagaagagcccattgttaaggtttattgtgttcag
actctagcaatccagcagtatacattagacttatgcttgtgcttgccacctcctacagag
aatgtgggttttgagaagtcagattctagtgtgtcacgggaagcaaatctttttgaaagt
atgtttgaaccatctggactgaaagctaccaaattaccatcagttaattcagtgcctaaa
ccatctattttagtgaatagatcggaaagtgccaatacgttgaattttccagcgggttct
gcatcagcggaaaccacatcaccagcaattgctccccccaatggtgagcctaaaacttct
gggctgccttctgagaccagtgatgcaggtgctccttcacctcaacattctctaagtcca
agactatcaagtaaactttctggctatcacactccttctgattgttttgttgataggcaa
aatgatgatgttggagaaaatagtttgaatgtatcttctgtcgacgaaagctctagaagc
aaagacatgaatgttaaacctgatgatgatatgtctgggattcgaagcccatcagctttt
ttcaaacaccctactcatctcgtaactccttcagagatattgatgggtgtttcatccact
gaagcctccgttactactgaagacaagagggatagaaatgctgatattcaggacgtgaat
aatgatgcaagaggcacagaagttgaggtcaaagaagtaagtgaagcacggtctacgcag
aatggtgaaatgaactatcatgaagaaactgcgaatcacacttctgaaagtagagaacaa
atcttctgctcacaggcttcgaatctcacagcaagagtccgtcatcctattacagaggaa
actgactctgtggcatatggacaacctttacaagttggggatgaaagaggtcttgactca
agagatgtgtctgcaaaccttcccaagtcggattcatctagtgggcttccacagttggta
gctacaaatagcaaagggaagaagcagaaggccaaaaattctcagggtcccagtttgtca
tcctcaaatgttgctaatctggctgaatccgtcagtgagcaatgtgagaggttaagtcat
cccatgacagattcgattcctcagttattagctatgcaagaaacgatgaatcagataatg
gtttcacagaaggagatgcagagacaactatcaaatgctgtcactggccctattgtaaaa
gaaggtaaaagacttgaagtggctatagggagaatgatagagaaatccagcaagtcaaat
gctgatgctttattggcccgcttccaagaggaggctgttaagaatgaaaaggcattacgt
gaccatgcacaacaaattgtgaatgcaacgtcaaacttcatgagcaaggagttaaatgcc
atgtttgagaaaacggtgaagaaggaatttgctaccgttggtccatccctagcacgtgca
gcaactccagttattgaaaaaactgtttcctctgcaatcacagaatcctttcagagagga
attggtgacaaagcagttaatcagcttgataaatctgttattacaaagcttgaaacaacc
atagccaggcaaattcaagcccaatttcagacgtctggtagacaagccctccaggaaggt
cttaggtcaagtctggaatcttcagtcataccgtcctttgagagagcatgcaaggccatg
tttgtgcaagtagactcaaccttccagaaagggatggctgagcacacaagtgcagcccag
caacggttcgactctggacactcccagcttgctcatactctgaaggaaaccattagttcc
gcatcatcagttactcaagccctaaatcatgaattagccgagagtcaaaggaatcgctta
gctctcgcagctgctggagctagttctggtggatcaaatcccttggttactcaactaagt
aatggacctttaggtgctcttcttgaaaaggttgaagtgcctatggacccaacagcagaa
ctttcaaggttgatatctgagcgcaagtacgaagaatctttcacttcggctctacagaga
agcgatgtctctatagtatcatggctttgctcacaggtggatcttcgtggactactggct
atgaatccgcttccgctgagccaaggcgtgcttctttcactgctgcagcagctatcttgt
gacatcagcaaggacacatcccgtaagctaggttggatgactgatgttgttgcagccata
aacccatcagatcagatgattgcggtccacgcgcggccaatctttgaacaagtttatcag
attttgcaccaccagcgtaacgcaccaggcagcgacatcactgccgtcagacttataatg
cacgtgatcaactctatgcttatgagctgcaaatga
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