Camelina sativa (false flax): 104765823
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Entry
104765823 CDS
T05044
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104765823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104765823
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104765823
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104765823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
104765823
NCBI-ProteinID:
XP_010487902
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All DBs
Position
3:3191126..3195383
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AA seq
615 aa
AA seq
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MSSLLNSSINGSTSNLSDGSGRTFTSSFSGQSGAASPVFHHAGSIQGLHNIHGNFNVPNM
AGSLGSRNSGLNGVPSAGVQQQNGSISNGRFASSNIPVALSQISHGSSHGHSGLTNRGGL
GVSPILGNAGSRMTSSMGNMVGGGTMGRTLSSGGGLSMPSLGSRLNLAVNSGSGNIGQNR
MMGGGVIPQGSPQVLSMLGNSYPTAGGLSQNHVQAMNSLSSMGLLNEMNSNDTSPFDINN
DFPQLTSRPSSASGQGQLGSRLKQGLGISPIVQQNQEFSIQNEDFPALPGYKGSSADYPM
DMHHKEQLHENSMLMMQSQQLSMGRSGGFNLGGAYASHRPQQQQQHAQAVSSSGVSLHGS
DIFSSSHPSYHSQTGGPPGIGLRSMNSANSVTGMGYDQQLIQQYQHQQNTSQYRLQQMSA
VSQPFRDVGLKSTQATQSSPDRFGLLGLLSVIKMTDPDLTSLALGIDLTTLGLNLNSTEN
LHKTFGSPWSNEPSKGDPEFSVPQCYYAKNPPPLHPGLFAKLLVETLFYVFYSMPKDEAQ
LYAANELYNRGWFYHKEHRLWFIRIGEPLVKTNAYERGSYHCFDPNSFDIVQKENSVLYY
EMLEKRPSLSQDSQH
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtttacttaattcctcaattaacggttctacctcgaacttgtcagacggttca
gggagaacgtttacttcttctttctctggtcagtctggggcagcgtctccggttttccat
catgctggatcgattcagggccttcacaacattcatggaaactttaatgttcccaatatg
gcgggttcccttggatcgagaaattcaggtttaaatggtgttccttcagctggtgtccaa
caacaaaatggaagtatttcgaatggaagatttgcatccagcaatattcctgttgcactc
tctcagatatctcatggtagctctcatggacactcaggactcactaataggggagggttg
ggagtttctccaattttgggaaatgcaggttctcgaatgactagttcaatgggaaatatg
gtcggtggaggcacaatgggtaggacgttgagctctggtggaggactatcgatgccgagt
cttggttcgcggctaaatttggcggttaatagcggttctggaaatattggacaaaatcgc
atgatgggtggtggagtcattccacaaggatctccgcaggttctttcgatgctgggaaac
tcttaccctacagctggagggctttcccaaaatcatgttcaagcaatgaacagtctaagc
tctatgggattgctgaatgaaatgaactccaacgacacttctccatttgatataaataat
gattttcctcagctcacaagccgccccagctctgccagcggtcaaggacaattggggtct
cgattgaaacaaggccttggaatcagccccatagttcagcaaaaccaagagttcagcatc
cagaatgaagattttccagcattgccaggatataaaggtagtagtgctgattatccaatg
gatatgcatcataaagaacaactccatgagaattcaatgttaatgatgcaatctcaacaa
ttatctatgggtaggtctggtgggtttaacttaggtggagcttatgcgtcacatcgtcct
caacaacaacaacaacatgctcaagctgtgagtagtagtggtgtctccttacatgggtct
gacatcttctcatcttcgcatccatcttaccattcacagactggtggaccaccgggtatt
ggattaagatctatgaattctgcaaattctgtcactgggatgggatatgaccagcagctt
atccagcaatatcagcaccaacagaacacgtcgcagtatcgcttgcagcagatgtcagct
gttagccaacctttcagagatgtggggttaaaatcaacgcaggctacacagtcaagtcct
gatcggtttggcttgcttggtttgctcagtgtgataaagatgactgaccctgacttgact
tctttggcacttgggattgatctgacaacactggggttaaatttgaactcaacagaaaat
cttcacaagacttttggctcgccttggtccaacgaaccctctaaaggtgatccagaattc
agtgtaccgcagtgctattacgcaaaaaaccctccacctctgcatccagggctctttgcg
aaattattggtagaaacattgttttacgtattctatagcatgccgaaagatgaggcacaa
ttatatgcggcaaatgaactttacaataggggttggttctaccacaaagagcacaggttg
tggttcattagaatcggggaacctctcgtgaaaacaaatgcgtatgaaagaggatcatat
cactgttttgatccaaactcatttgatatagttcaaaaggaaaattctgttctctattac
gagatgctggaaaaaagaccatccctatctcaagactctcaacattga
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