Camelina sativa (false flax): 104766591
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Entry
104766591 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104766591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104766591
03041 Spliceosome [BR:
csat03041
]
104766591
03009 Ribosome biogenesis [BR:
csat03009
]
104766591
03016 Transfer RNA biogenesis [BR:
csat03016
]
104766591
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104766591
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104766591
Spliceosome [BR:
csat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104766591
Complex C
U4/U6.U5 tri-SnRNP related factors
104766591
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
Pre-60S particles
Helicases
104766591
Transfer RNA biogenesis [BR:
csat03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104766591
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
104766591
NCBI-ProteinID:
XP_010488803
LinkDB
All DBs
Position
19:17339935..17350291
Genome browser
AA seq
994 aa
AA seq
DB search
MNTQMEEPEALGKRKVAESSKLADESPTPEPTPKRRSLKRACVHEVAVPNDYAPTKEETI
HGTLDNPVFNGDMAKTYPFQLDPFQSVSVACLERKESILVSAHTSAGKTAVAEYAIAMAF
RDKQRVIYTSPLKALSNQKYRELQHEFQDVGLMTGDVTLSPNASCLVMTTEILRAMLYRG
SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICYL
HKQPCHVVYTDFRPTPLQHYAFPVGGSGLYLVVDDNEQFREDNFSKMQDTFPKPKSVDGK
KSANGKSGGRGAKGGGGPGDSDVYKIVKMIMERKFEPVIIFSFSRRECEQHALSMSKLDF
NTDEEKEIVEQVFTNAIQCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLF
QEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDE
RGICIIMIDEQMEMNTLRDMMLGKPAPLLSTFRLSYYSILNLLSRAEGQFTAEHVIRHSF
HQFQHEKALPDIGNKVSKLEEEAAILNASGEAEVAEYHKLQLDIAQHEKKLMSEIIRPER
VLCFLETGRLVKIREGGTDWGWGVVVNVVKKSSVGTGSASSNGGGYIVDTLLHCTTGFSE
NGAKPKPCPPRPGEKGEMHVVPVQLPLISALSRLRVSVPSDLRPVEARQSILLALEELTN
RFPLGFPKLHPVKEMNIQDTEIVDLVSQVEEVEQKLLAHPMHKSQDDQQIKSFQRKAEVN
YEIQRLKSKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVT
ELMFNGTFNDLDHHQVAALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEIQHEC
KLEIDVEEYVESTIRPFLMDVIYSWSKGASFAEIIQMTDIFEGSIIRSARRLDEFLNQLR
AAADAVGESSLESKFAAASESLRRGIMFANSLYL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgaacacccaaatggaagaaccagaggcgctcggcaaaagaaaagtagctgaaagctca
aaacttgctgatgagtctccaacgcctgaaccgacgccgaagcgtagaagccttaaacgt
gcctgtgtacatgaagtcgctgttcccaacgattatgcaccaacgaaagaggagacgatt
catgggacgcttgataatcctgtcttcaatggagacatggccaagacctatccttttcag
ctcgacccttttcagagcgtatctgtagcttgcttagagaggaaagagtcgattttggtt
tctgcccatacttcagctggtaaaactgcagtcgctgagtatgctattgcaatggcgttt
agagataagcagagggttatttatacttcacccttgaaagctttgagtaatcagaagtat
agagaattgcagcatgagtttcaagatgttggtttgatgactggtgatgttactctctca
cctaatgctagttgtttggttatgacaacagagatcttgagagccatgctttatagaggg
tctgaagtcttgaaggaggttgcttgggttatctttgatgagattcattacatgaaggat
agggaaagaggagttgtttgggaagagagtattattttcttgccacctgctattaagatg
gtttttctttcagccactatgtcgaatgctactgaatttgcagaatggatatgttatctg
cacaagcagccatgtcatgttgtgtacacagattttaggccaacacctttgcagcattat
gcttttcctgtcggtgggagtggactgtaccttgtggttgatgacaatgagcaatttagg
gaggacaattttagtaagatgcaggatactttcccgaaaccgaaatctgttgacgggaaa
aagagtgcaaacggtaaatcaggtggtaggggtgctaaaggtggaggtggacctggtgat
tctgatgtttacaaaattgtaaagatgatcatggagagaaaatttgaaccagtcatcatc
ttcagcttcagtagaagagagtgtgaacagcatgcattgtcaatgtcaaaactcgatttt
aatacagatgaagagaaagagattgtggaacaggtgttcactaatgctattcagtgcttg
aatgaggaggatagatctttacctgccattgaactgatgttgccactgctgcaacgtggt
attgctgtccatcattctggtcttcttcctgtcatcaaggaattagtggagctgcttttt
caggaaggacttgtgaaagcactttttgccacagaaacttttgctatgggtttgaacatg
cccgcaaaaactgtagtgtttactgctgtgaagaagtgggatggtgacagccatcgttac
attggctctggtgaatatattcagatgagcggcagggctggacgtcgtggaaaggacgaa
cgtggcatctgcattattatgattgatgaacagatggagatgaatacactcagggacatg
atgttgggcaaaccagccccgttgcttagtacttttaggttgagttactactcaattttg
aatttattgagtcgtgccgaaggacaatttactgctgagcatgttataaggcactcgttc
catcaattccagcatgaaaaggctttaccagatattgggaacaaggtttccaaacttgaa
gaggaagctgccatccttaacgcttctggagaggcggaggttgctgaatatcataagcta
caacttgacatagctcaacatgaaaagaaacttatgtcagaaataataaggcctgaaagg
gtgctttgttttcttgaaactggtcggctggttaagattcgagaaggtggaacagactgg
ggttggggagttgtagttaatgttgttaaaaaatcttcagttggaacgggttcggcttct
tcaaatggtggcggatatatagtggatacactacttcattgcactactggttttagcgaa
aatggtgcaaagccaaagccatgccctccccgtcctggggaaaagggtgagatgcatgtg
gttcctgttcagctacccttgatttctgctttgagcagactaagggtatcagttccttct
gatcttcggccagtagaagcaagacagagcatactacttgcattagaggagttgacaaat
cgcttccctctagggttcccaaaactccatccagtcaaggaaatgaatattcaagataca
gagatcgtggatcttgtcagccaagtcgaagaagttgagcagaagttacttgctcatccg
atgcacaagtctcaagatgatcaacaaatcaagagtttccagaggaaagcagaggtgaat
tatgagattcagcggctgaaatcgaaaatgcgtgattcccagctccaaaagtttcgagat
gagcttaagaatcgttctcgggtattaaagaaacttggacacattgatgcggatggtgtc
gtccagttaaaaggacgagctgcgtgcttgatagacacaggggatgaattgcttgtcact
gaactgatgtttaatggtacttttaatgatctggatcatcaccaagtagcagcccttgca
agctgttttattcctgtggataaatcaaatgaacaggtaaatttaagaaatgaacttact
aaaccattgcagcagctccaagatagtgcacgaaaaattgcagagatacaacatgaatgc
aagctggaaattgacgttgaagagtatgtggaatccaccatcaggcctttccttatggat
gttatctactcttggtcaaagggcgcgagctttgcagagattatacaaatgactgacata
tttgagggtagtatcattaggagcgctagaaggctcgatgagtttttgaaccagcttcga
gctgcagcggatgcagttggagaaagcagtttagagagcaagtttgcagctgctagcgag
agcttgcgacgaggtattatgtttgcaaattcgctttacttgtaa
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