Camelina sativa (false flax): 104767248
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Entry
104767248 CDS
T05044
Name
(RefSeq) phytochrome B isoform X1
KO
K12121
phytochrome B
Organism
csat
Camelina sativa (false flax)
Pathway
csat04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
104767248
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Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_4
PAS_9
PAS_8
PAS_3
sCache_3_2
Motif
Other DBs
NCBI-GeneID:
104767248
NCBI-ProteinID:
XP_010489599
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Position
19:26364542..26369192
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AA seq
1163 aa
AA seq
DB search
MVSGGTGGGAASSSHHTANNNNNKRRGEQAQSSGTKSLRPQESSMSKAIQQYTVDARLHA
VFEQSGGSGKSFDYSQSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFG
IIGYSQNAREMLGLMPQSVPSLEKPEILAMGTDVRSLFTSSSSILLGRAFVAREITLLNP
VWIHSKYTGKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLP
GGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIP
QASRFLFKQNRVRMIVDCHATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSVA
SLAMAVIINGNDEDGSNAASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQL
NMELQLALQMSEKRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYP
LGVAPSEVQIRDVVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDF
LFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSQPWETAEMDAIHS
LQLILRDSFKESEAAMNSKTVDGAVQPYKDMAGEQGIDELGAVAREMVRLIETATVPIFA
VDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEETVSKLLSRALRGDEEKNVE
VKLKTFSPELQGKAVFVVVNACSSKDYLNNIVGVCFVAQDVTGQKIVMDKFINIQGDYKA
IVHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWSRSEVIGKMLVGEVFGSCCRLKGPDA
LTKFMIVLHNSIGGQDTDKFPFPFFDRNGKFVQALLTANKRVSLDGKVIGAFCFLQIPSP
ELQQALAVQRRQDTECFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQFLETS
VSCEKQISRIVGDMDLESIEDGSFELKGAEFFLGSVINAIVSQAMFLLRDRGLQLIRDIP
EEIKSVAVYGDQIRIQQLLSEFLLSIIRYAPSQEWVEIHLSQVSKQMANGFATIRTEYRM
ACPGEGLPPELVRDMFHSSRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL
PDPRKRPLSTASGSGDMMLMMPY
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggtttccggaggtactggcggcggagcagcgtcgtcaagtcatcacactgctaataat
aataacaacaaacggagaggagaacaagctcaatcttctgggacgaaatccctcagacca
caagaatcctcaatgagcaaagcgattcaacagtacaccgtcgacgcgaggctccacgcc
gtcttcgagcaatccggcggatcaggcaaatccttcgactactctcaatcactcaaaacg
acgacgtacggttcctccgtgcctgagcagcagatcaccgcttatctctcccgaatccag
cgaggaggttacattcagcctttcggatgcatgatcgccgtcgacgaatcgagcttcggt
atcatcggttacagccaaaacgctagggaaatgctggggctcatgcctcagtctgttcct
agtcttgagaagcctgagattctagccatggggactgacgtgaggtctttgttcacttcc
tccagctcgatcctactcgggcgtgctttcgtggctcgggagatcaccttgttgaatccg
gtttggatccattccaagtatactggtaaaccgttttacgccattctccataggattgat
gttggtgttgtgattgatttagagccagctagaactgaagatccggcgctttctattgct
ggtgccgttcagtctcagaaactcgcggttcgtgctatttcgcagttgcagtctcttccc
ggtggagatattaagcttttgtgtgacactgttgttgagagcgtgagggacttgactggt
tatgatcgtgttatggtttataagtttcatgaagatgagcatggtgaagttgttgctgag
agtaagcgagacgatttggagccttatattggactgcattatccagctactgatattcct
caagcgtcacgtttcttgtttaagcagaaccgtgtccgaatgattgtggattgtcatgcc
acgccggttcttgtggtgcaggacgataggctgactcaatctatgtgcttggttggctct
actcttagggctcctcatggttgtcactctcagtatatggctaacatggggtctgttgcg
tctttagctatggcggttataattaatgggaatgatgaagatgggagcaatgcagctagt
gggagaagctcaatgaggctttggggtttagttgtttgccatcacacttcttctcgctgc
ataccctttccgctaaggtatgcttgtgagtttctgatgcaggctttcggtttacagttg
aacatggaattgcagctagctctgcagatgtcagagaaacgtgttttgagaacgcagact
ctgttgtgcgatatgcttctgcgtgactcgcctgctggaattgttacacagagtcctagt
atcatggacttggtgaaatgtgatggtgcagcatttctttaccacggcaagtattacccg
ttgggtgttgctcctagtgaagttcagataagagatgttgtggagtggttgcttgcgaat
cacgcggattcaactggattaagtactgatagtttaggcgatgccgggtatcctggtgca
gctgccttaggggatgctgtgtgcggcatggcagttgcatatatcacaaaaagagacttt
cttttctggtttcgatctcacactgcgaaagaaatcaaatggggaggcgctaagcatcat
cccgaggataaagatgatgggcaacgtatgcatcctcgttcatcctttaaagcttttctt
gaagttgttaagagccggagtcagccatgggaaactgcggaaatggatgcgattcactct
ctccagcttattctgagagactcttttaaagaatctgaggcggctatgaactctaaaact
gtggatggtgcggttcagccatataaagatatggcaggagagcaagggattgatgagtta
ggtgcagttgcaagagagatggttaggctcatcgagaccgcaactgttcctatattcgct
gtggatgccggaggctgcatcaatggatggaacgctaagattgcagaactgacaggtctc
tcagttgaagaagctatggggaagtctctggtttctgatctaatatacaaagagaatgaa
gaaactgtcagtaagcttctttctcgtgctttgagaggggacgaggagaagaatgtggag
gttaagctgaaaactttcagccctgaacttcaaggcaaagcggtttttgtggttgtgaat
gcgtgttccagcaaggactacttaaacaacattgtaggcgtctgttttgttgcacaagac
gttactggtcagaaaatcgtaatggataagttcatcaacatacaaggagattacaaggct
attgtccatagcccaaacccgctaatcccgccaatatttgctgctgacgagaacacttgc
tgcctggaatggaacactgcgatggaaaagcttacgggttggtcccgcagtgaagtgatt
gggaaaatgctcgttggggaagtgtttgggagctgttgcaggctaaagggtcctgatgct
ttaaccaagttcatgattgtattgcataattcgattggtggccaagacacggataagttc
cctttcccgttttttgaccgcaatgggaagtttgttcaggctctattgactgcaaacaaa
cgggttagcctcgacggaaaggttattggggctttctgtttcttgcagatcccaagtcct
gagctgcaacaagctttagcagtccaacggaggcaggacacagagtgtttcacaaaggcg
aaagagttagcttatatttgtcaggtgataaagaatcctttgagcggtatgcgtttcgcg
aactcattgttggaggccacggacttgaacgaggatcaaaagcagttccttgaaacaagt
gtttcttgtgagaaacagatctcaaggatcgtcggtgacatggatcttgaaagcattgaa
gacggttcgtttgagctaaagggagcggaatttttcctcggaagtgtcataaacgcgatt
gtaagccaagcgatgttcttattaagggacagaggtcttcagctgatccgtgacattcca
gaagagatcaaatcagtagctgtttatggagaccagataaggattcaacaactcctgtct
gagtttctgctgagtataatccggtatgcaccatctcaagagtgggtggagatccattta
agccaagtttcaaagcaaatggctaatggattcgccactatccgcacagaatacagaatg
gcgtgtccaggtgaaggtctgcctccagagctggtccgagacatgttccacagcagcagg
tggacaagccctgaaggtttaggtctaagcgtatgtcgaaagatattaaagttaatgaac
ggtgaggttcaatacatccgagaatcagaacggtcatatttcctcatcattctcgaactc
cctgatcctaggaaacgcccattgtcaaccgcgagtggcagcggtgacatgatgttgatg
atgccatattag
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