Camelina sativa (false flax): 104768297
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Entry
104768297 CDS
T05044
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
csat
Camelina sativa (false flax)
Pathway
csat03440
Homologous recombination
csat03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104768297
03460 Fanconi anemia pathway
104768297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csat04121
]
104768297
03036 Chromosome and associated proteins [BR:
csat03036
]
104768297
03400 DNA repair and recombination proteins [BR:
csat03400
]
104768297
Ubiquitin system [BR:
csat04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
104768297
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
104768297
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
104768297
FA (Fanconi anemia) pathway
Downstream FA components
104768297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Orbi_NS1
Motif
Other DBs
NCBI-GeneID:
104768297
NCBI-ProteinID:
XP_010490532
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Position
20:217172..227689
Genome browser
AA seq
1153 aa
AA seq
DB search
MSTWQLFPDSSGDGFRWEVAGRILQSGSDDSTPNQALDFTAPLPSMPDLLLQGCSKLIER
EESMPMAGEIPMFRTGLGKSVPLKESSIARAKSLLADDNVASYSDFQNTYSSNPQMRAVG
TPGTLPMFTTALGKSVPLKESSIAKALSILGGDKINDSANVLPRESGFGVPNSLFQTASN
KKVNVSSAGLARAKALLGLEEDDLNEFTHVNQSSSSHHQREWSGLKTHEEDHSRTPGQFE
DRISGKMSEILNPSLKVAPTKFQTADGKSLSVSAEALNRARNLLGDPELGAFFDDVAAAG
DQFVTPQKDEKLGDIAINSGSANTVYTAHEEKTSNKHTSNSFVSPLRSSSKQFRSVKLEN
LPLGGNLIKKFDAAVDEADCALNITKLATHGLSNNRPLSSDMAVNNSKENGFNPRAKQFG
RPADQPLVDITNRGIAYANNKQDSTQKKRLGKTVSASPFKRPRISSFKTPLKKNDLHASS
GLSVVSSDTLSSKKVLSTRYPERSPRVYIKDYFGMHPTATTKMDYVPDHVRRIKSSNADK
YVFRDESSSNMVGAETFLQMLAESGASLQHASRKWVTNHYRWIVWKLACYEIYYPAKCRG
KFLTVTNVLEELKYRYEREVNHGHCSAIKRILSGDAPASSMMVLCISAINPKTNNDSQET
HGSDSCSNVKVELTDGWYSINAALDVVLTKQLNAGKLFVGQKLRILGAGLSGWATPTSPL
EAVTSSTICLLLNINGTYRAHWADRLGFCKEIGVPLAFNCIKCNGGPVPKTLAGITRIYP
ILYKEKLGEKKSIVRSERMESRIIQLHNQRRSAVVEGLMCEYQRGINGFNSQNDTDSEEG
AKVYKLLETAAEPEFLMAEMSPEQLTSFTTYKAKYEAAKQMKMEKSVAKALEDAGLGERN
VTPFMRIRLVGLTSLSYEGEHNPKEGIVTIWNPTEKQRTELTEGKIYIMKGLVPMNSDSE
TLYLHARGSSSRWQPLSPKASESFQPFFNPRKPISLSNLGEIPFSSEFDIAAYVVYVGDA
YTDVQQKKQWVFVTDGSTQHSGENSYSLLAISFSTPAMDDISVPHISQNLVGSVVGFCNL
IKRAKDAKNEMWVGEATENSVYFINAEAAYSSHLRTSSAHIQKWAKLASSNSVIHELRQR
VLLIIGACKSPSC
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtggcagttatttcccgattccagcggcgatggtttccggtgggaagtagct
ggccggattcttcagtccggctcggatgattctactccaaatcaggcgctcgacttcaca
gctcccctaccttccatgcccgatctcttgcttcaaggatgctcgaagcttatagaacgg
gaagaatcaatgcccatggctggtgaaatcccaatgttcaggactgggctggggaagtct
gtacctctaaaagagtcttcgattgctagagccaaatcccttttagctgatgacaatgtt
gcctcctattcagattttcagaacacttatagctcaaatccccaaatgcgagcagttggt
acacctggaactttgcctatgttcacgacggctttaggcaaatccgtcccactgaaagag
tcttcaattgccaaagctttgtctattcttgggggtgataagattaatgactcagccaac
gttcttcccagggagagtgggtttggtgttcccaattcacttttccagacagcttctaac
aagaaggttaatgtatcttctgccggtttggcaagagccaaggcattgctaggactagaa
gaagatgatttgaatgaatttacgcatgtgaaccagtcgtcttcttcccaccaccaacgt
gagtggtctggattaaaaacgcatgaggaggatcattcaagaactccaggacaatttgag
gatcgtatttcagggaagatgtctgaaatcctaaatccatctttaaaggttgctccaaca
aagtttcagactgctgatggaaaatcattgtcagtgtcagctgaggcattgaatcgtgcc
agaaatcttcttggggatcctgaattaggggctttctttgatgatgtagcggcagcaggt
gatcaatttgttacaccacagaaagatgaaaagttaggtgatattgctataaacagtgga
agcgccaatacagtttatactgctcatgaagaaaaaacaagcaacaaacatacgtcaaac
agttttgtatctcctcttcggtcatcttcaaagcagtttaggtcagtgaaattggagaac
ctacctttagggggtaatttgatcaagaaatttgatgcggctgttgatgaggcagactgt
gctctgaatatcaccaaacttgctacacatggactatcaaataacaggcctttatcatca
gatatggctgtgaacaattccaaggaaaacggtttcaatccaagagctaagcagtttgga
aggccagccgaccagccacttgtcgatataacaaatcgcggtatagcttatgcaaacaat
aaacaagacagtactcaaaagaaaaggctgggaaagacagtatccgcttctccttttaaa
aggccaaggatttcctcctttaaaactcctttaaagaaaaatgatctgcatgcttcaagt
ggtttgtctgtcgtatcttctgatacacttagttccaaaaaggtactttcgacaagatat
ccagaaaggtctccaagagtatatattaaggattattttggaatgcatccaacagctacg
accaagatggattatgtgccagaccatgtcagaaggatcaaatcaagtaatgcagataaa
tatgtattccgtgatgagtcttcctcaaacatggttggagctgaaacttttcttcaaatg
ttggcagagtctggtgcttccttacaacatgcatcgagaaagtgggtcactaatcactac
aggtggatagtctggaagcttgcatgctacgagatatactacccagcaaaatgcagagga
aaatttctgacagtcaccaatgttctggaggaactaaaatacagatatgagagagaggtc
aatcatggtcattgctctgcaatcaagaggatcctgagtggtgatgctccagcttcttca
atgatggtgctctgcatatcagctatcaatccaaagaccaacaatgattctcaggaaaca
catggttctgatagttgcagcaatgtgaaagtagaactcactgatgggtggtactcgatt
aatgctgctctggatgtggtgctaacaaagcagctgaatgctggaaaattgtttgttggg
cagaagcttcgaatcctcggggcaggactttctggctgggctaccccaacatcacctctt
gaggcagtaacttcaagtacaatctgtttgttgttgaatattaatgggacatacagagct
cactgggcagaccgactaggattctgtaaagaaattggtgtccctctagctttcaactgt
atcaagtgcaatgggggtcctgtgcctaaaacgctagctggaatcacacgaatatacccc
atactatacaaggaaaaattaggtgaaaagaagtcaatagttcgatcagagagaatggaa
agtagaattatccagctgcataatcagaggcgctcagctgttgttgaaggtcttatgtgt
gagtaccagagaggaatcaatggatttaacagccagaacgacactgacagcgaagaagga
gccaaggtctataagctgttagagacagctgctgaacctgaattcctaatggcagaaatg
agcccggagcagttgacatctttcactacatataaagcaaaatacgaggcagcaaagcaa
atgaagatggaaaaatcagtagcaaaagctctggaagacgcgggcttaggtgaaagaaat
gtcactccattcatgaggattaggcttgttggactgacgagcttaagttatgaaggtgag
cacaatccaaaagaaggcatagtaacaatctggaatcctacagagaaacagagaaccgag
ctgacggagggaaaaatatatataatgaaagggctagtaccaatgaactcagattcagaa
acactttacttacatgccagagggtctagctcaagatggcaacctttgtctccaaaagct
tctgaaagttttcagccctttttcaacccacgtaaaccaatatctttgtcaaatcttggt
gaaattcctttttcaagtgaatttgatatcgctgcgtacgttgtatatgttggagatgca
tacacggatgttcaacaaaagaagcagtgggtgtttgtgacagatggatccacccaacat
tcaggggaaaactcatacagccttcttgctataagcttcagcaccccagccatggatgat
atctcggttccccacatcagccaaaatttggttggatccgtggttggattctgcaatcta
attaaaagagcaaaagatgcgaaaaacgaaatgtgggttggtgaggcaacagagaactca
gtctacttcataaacgcagaagctgcatactcgtctcacctcagaactagcagtgcccat
atccaaaaatgggctaagctcgcttcttccaactccgtcatccatgaacttcggcaaaga
gtcctattaataatcggtgcttgtaaatcaccatcatgctga
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