Camelina sativa (false flax): 104768332
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Entry
104768332 CDS
T05044
Name
(RefSeq) transcription factor bHLH140 isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
104768332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csat03400
]
104768332
Enzymes [BR:
csat01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
104768332
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
104768332
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
104768332
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
104768332
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
104768332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
HIT
Macro
zf-C2HE
AAA_18
AAA_29
AAA
AAA_16
nSTAND3
AAA_17
AAA_22
AAA_19
ABC_tran
ATP_bind_1
AAA_24
NPHP3_N
PCC
AAA_5
Motif
Other DBs
NCBI-GeneID:
104768332
NCBI-ProteinID:
XP_010490577
LinkDB
All DBs
Position
20:complement(381918..387835)
Genome browser
AA seq
695 aa
AA seq
DB search
MEDSEKTKQIVVLLIGPPGSGKSTFCDTVMRSSLRPWYRICQDIINNGKAGTKAQCLKMA
ISSLKEGKSVFIDRCNLDREQRSEFVKLGGSGIEVHAVVLELPAQVCISRSVKRTGHEGN
LQGGRAAAVVNRMLQSKELPKVNEGFSRVMFCYNDADVENAVNTYSKLGLMDTLPSGCFG
EKKSDTKSQPGIMKFFKKVNALPGSSSSNEATNAMRKANEKTENFRVSPAKLGSADIVHT
LAFPSISTADFQFDLEKASDIIVEKAEEFLPKVGTARLVLVDLSHGSKILSLVKAKASQK
NIDSASFFTFVGDITKLRSEGGLHCNVIANATNWRLKPGGGGVNAAIFKASGPDLETATR
VRANTLLPGKAVVVPLPSTCPLHNAEGITHVIHVLGPNMNPNRPDNLNNDYTKGCKTLRE
AYTSLFEGFLSVVQDQSKFPKRSNETAASDSGENIKEHSERNKKYKGSQDKAVVNNMESG
SLEDTRDSGKKMSKEWSTWALALHTIAMHPERHENIVLEFSDNIVVINDQYPKARKHVLV
LARQESLDGLEDVRKENLQLLQEMHNVGLKWVDRFQNEDASLIFRLGYHSVPSMRQLHLH
VISQDFDSDSLKNKKHWNSFTSSFFRDSVDVLEEVKSQGKANVASEDLLKGELRCNRCRS
AHPNIPKLRSHVRSCRSQFPEHVLQNSRLVARPET
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggaagactctgagaagacgaagcagatagtggtgcttctgattggtccgccaggaagc
ggcaaatcgacgttttgtgacaccgtgatgcgttcctctctccgcccttggtatcgcatc
tgccaggacattattaacaatggcaaagctggaacaaaggctcagtgtttaaagatggca
ataagttcccttaaggaaggcaagagcgtttttatagacagatgtaatcttgacagagag
cagcgctctgagtttgttaagcttggtggttctggcattgaagtccatgcagtggttctg
gagcttcctgctcaggtttgtatttctagatcagtcaaaagaaccggtcatgaagggaat
ctacaaggcggtagagctgcagctgttgtgaataggatgcttcagagtaaggaactaccc
aaagtgaatgaagggttttctcgggttatgttttgttacaacgatgcagatgttgagaat
gctgttaacacttacagcaagcttggtctaatggatacgcttccttctggctgttttggc
gagaagaaatcagacactaaaagccaacctggtataatgaagttctttaaaaaagtcaat
gctcttcctggttcatcatcttctaatgaagctactaacgcaatgcgcaaagctaatgaa
aagacagaaaatttccgagtttcgccagctaagcttggttctgctgatattgtacataca
ctggcattcccatcaatttcaactgcggattttcagtttgatcttgaaaaggcttctgat
atcattgtcgagaaagcagaggaattcttacccaaagttgggactgcacgtcttgtcttg
gtggacttgagccacgggtcaaagattctgtctcttgtcaaagctaaggcttctcaaaag
aacattgactcagcgagtttcttcacatttgtcggggacattactaagcttcgttctgaa
ggtggtctacactgcaatgttatagctaatgctactaattggcggcttaaacctggaggt
gggggtgtgaatgcagcaatattcaaagcttctggtccagatctcgagactgccacaaga
gtacgagcaaacactcttcttcctggaaaagctgtggtagttcctcttccttctacttgc
cctttacacaatgcagaaggtattacacatgtcatacatgttctaggaccaaacatgaac
ccaaaccgaccagacaaccttaacaacgactacaccaagggctgcaaaactctccgggag
gcttacacatccctgtttgaaggttttctatcagtagtacaagatcaatcaaaatttccc
aaacgaagcaatgaaacagctgcgtcagattctggtgagaatattaaggaacactctgag
agaaacaaaaagtacaaaggatcacaagataaggccgtagttaataatatggaatcaggg
tctctggaggatacaagagacagtggaaagaagatgagtaaagaatggagcacatgggca
ttggctctccacaccatcgccatgcacccagagagacatgagaatatcgtgctagaattt
tcagacaacatcgttgtgataaacgaccagtacccaaaggctcggaaacacgtgctagta
ctggcgagacaggagagtctagatgggctagaagacgttcgcaaggagaaccttcaactt
ctgcaggaaatgcacaatgttggtctgaaatgggttgatagattccaaaacgaggatgca
tctcttatcttccgccttggatatcactcggttccgtcgatgcgacaactacatttacac
gttataagccaagactttgattcagatagtttaaagaacaagaaacactggaactcgttc
acgtcctcgttctttcgtgactcagttgatgtacttgaagaggtcaagagccaaggtaag
gccaatgtggcgagcgaagatctgttgaaaggggagttacgttgcaatcggtgtagaagc
gcacacccaaatattcctaaactcagatctcatgtcagaagctgccgttctcagtttcct
gaacatgtactccaaaacagtcgccttgtggctcgaccagagacttag
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