Camelina sativa (false flax): 104768461
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Entry
104768461 CDS
T05044
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4-like isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104768461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csat04121
]
104768461
Enzymes [BR:
csat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
104768461
Ubiquitin system [BR:
csat04121
]
Ubiquitin ligases (E3)
HECT type E3
104768461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
Motif
Other DBs
NCBI-GeneID:
104768461
NCBI-ProteinID:
XP_010490758
LinkDB
All DBs
Position
20:895960..903224
Genome browser
AA seq
1534 aa
AA seq
DB search
MENRGQKRMEVVEELPADKRACNSQDFRPSTSGSSVQAQDNGATSPGHDQDQVDADMDTS
SSASPSSRSDEEEHEEEHDKESDEEEEQDKESDEEDEQDKEDSDYGSCDSDEEDSRQRVL
EEYQRGRSSDDQGKLKSLLSTLSGETDPSGQLSGLTELCEVLSFCTEESLSDTMAHKLSP
VLVNLAKHENNADIMLLAIRAITYLCDVYPPSVAILVRHETIPALCQRLLTIEYLDVAEQ
CLQALEKISRDQPVACLNAGAIMAVLSFIDFFSTSIQRVAISTVVNICRKLSSESPSPFM
DAVPILCNILQYEDRQLVENVAICLTKIADQVSESPATLDQLCRHGLIHQSTHLLNLNSR
TTLSQPVYNGVIGLLRKLSSGSTLAFRTLYELNIGYRLKEIMSTYDISHSVSSTHVINAC
SSNQVHEVLKLVIELLPASSVEDNQLALEKESFLVNQPDLLQQFGTDMVPVMIQVLNSGA
TVFVSYGCISAIHKLTCLSKSGDLVKLLKNANISSVLAGILSRKDHHVVVVALQLAEVLL
EKYSDTFLNSFIKEGVFFAIEALLNSDRGQQNPVSGFIQGSSDVSQKPATKEIVKCLCQS
FGKSLSSSSQTCKIDTDTVNILATRIKESFFGPEVFNSEKGLTDVLQDLKVLSEALSALM
TVPIDAHVLHDEKFFSIWNQIRERLNGRESVSTFEFTESGVVKSLADYLSNGLYQRKLSK
GDPECDTLPFVGKRFEVFTRLLWSDGEATPSVLIEKLQNSLSSLENFPIVLSQFLKQRNS
FAAIPNGRCTTYPCLRVRFQKAEGETSLRDYSQDFVTVDPLCYFDDVNQYMWPKVNIEPV
ESVEAKDQAIECQSSQLQSTSISCQGESSTPMELDSAPSDAPQFQGSQVEDQTQLPVLSS
GSEQQDASSSEKEDALPRLLFRLGGLELDRSLAVYQAILLHKLKSENETTNGSKLSGPHY
ITYERAAQLGDSSKNLVPPDSMEDNEYRPFLSYLFAHRLALRLKGSSPPAYDILFLLKSL
EGINRYLFHLISLGRINAFGEGRLENLDDLMVLVRPVAHSEFVSSKLTEKLEQQLRDSFA
VSTCGLPPWFNDLMDSCSFLFSFEVKSKYFRLAAFGSQKIHHHPQHLSNSNGEGRPVTGS
LPRKKFLACREKILESAAKMMELYGNQKVVIEVEYSEEVGTGLGPTLEFYTLVSRAFHNP
ELGMWRSDCSSLVGKPSEHSGVLASPSGLFPRPWSGTSAAFSDVLQKFVLLGTVVAKALQ
DGRVLDLPFSKAFYKLILGQELSSFDIHFIDPALCKTLVELQALARRRKVFAEAQGNSRA
AKCDLSFHGTKIEDLCLEFALPGYTDYDLAPHSDNDMVSLDNLEEYIKAIVNATVCSGIQ
KQVEAFRSGFNQVFPIEHLRIFNEEELETMLCGERDLFNMNEVLDHIKFDHGYTSSSPPV
ENLLEILHEFDKEQQRAFLQFVTGSPRLPHGGLASLNPKLTIVRKHGSDSSETDLPSVMT
CANYLKLPPYSSKEKMKEKLMYAITEGQGSFHLS
NT seq
4605 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagaggccagaaacgaatggaggttgtggaagagttacctgctgataagaga
gcttgtaactcacaagatttcaggccaagcacctctggatcatctgttcaggctcaagat
aacggtgccaccagtccaggacatgatcaggatcaggttgatgccgatatggatacttct
tcatctgcttccccttcgagtcgatcagatgaagaagaacatgaagaagaacacgataag
gaatcagatgaagaagaagaacaagataaggaatcagatgaagaagacgaacaagataag
gaggattctgactatggatcctgcgattctgatgaggaagattccagacaaagggtgctt
gaggagtatcagagagggagatcatctgatgatcaagggaaattgaagtctcttttgtct
actttgagtggagaaaccgatccttcagggcagttatccgggcttactgaattatgcgaa
gttttgtcattttgtactgaagagtccctgtccgacacaatggcccacaagctctcaccg
gtgcttgtaaatttagctaagcatgagaacaatgcagatattatgctgctcgccattaga
gctattacttacttgtgtgatgtttatccgccttcagtagcaatacttgtaagacatgag
actattcctgctctctgtcaaagactgttgactattgagtacttggacgttgctgagcag
tgtttgcaagcgcttgagaaaatatcccgagatcagccagtagcctgcttgaatgctgga
gcaattatggctgtgctttcgtttatcgatttcttctcaacaagtatacagagagtcgca
atttctactgtggtcaatatatgtaggaagctttcatctgagtctccctcgcctttcatg
gatgctgttcctatattatgtaatattcttcaatacgaagatcgacagttggttgagaat
gtggctatttgcttgacaaaaatagcagatcaagttagtgagtcgcctgcaacgttggat
caactgtgtcggcatggactaattcaccaatcaacacatctcttaaacttgaatagccgc
actaccctgtctcaacctgtttacaatggtgtgattggattgctgagaaaactttcttct
ggttcaactttagctttcagaacgttatatgaacttaacattggctacagattaaaagaa
atcatgtccacgtatgacatttctcattcagtgtcttctacacatgttatcaatgcatgc
tcctccaatcaggtgcatgaagtcttgaagttggtaattgagcttcttccagcttcatcc
gttgaggataatcagctggcattggaaaaggaaagttttcttgtcaatcagcctgatctt
ttgcaacaatttggaactgacatggttcctgttatgattcaggtgctaaactctggagca
accgtttttgtttcttatggttgcatatcagcaattcacaagctgacttgcttgagtaag
tcaggtgatcttgtcaagttgcttaagaacgccaacatttcaagtgttttggctggtatc
ttgtcgaggaaggatcatcatgtggttgtagtagcgttacagcttgcagaagtgcttctt
gagaaatacagtgatacttttttgaattcctttattaaggaaggtgtttttttcgctatt
gaagcactcttaaattctgatagagggcaacaaaatccggtatctggtttcattcaggga
tcatctgacgtttcacaaaagcctgctacgaaagagattgtgaaatgcttgtgccaatct
tttggaaaatcactatcctcgtcttcacaaacatgtaagattgacactgatactgtcaac
attcttgcaacacgtatcaaggagagtttctttggacctgaggtattcaactctgagaaa
ggcttgacagatgtccttcaagacctcaaggtattgtcggaagcacttagcgctttgatg
actgtacccattgatgcacatgtcctgcatgatgagaaattcttctcaatatggaaccaa
atcagggaaaggctgaatggaagggaatctgtgtccacttttgaatttacagagagtgga
gttgtaaagtcactggctgattatctctctaatggactctatcaacggaaacttagcaaa
ggggatcctgaatgtgatactttaccgtttgttggtaagagatttgaggtgttcacaaga
ttactttggtctgatggtgaggcaactccatccgtgttaatagagaagctccaaaattcc
ttatcttctctggaaaacttcccaatcgtcttaagtcaattcttgaagcaaaggaactca
tttgcagctattccgaatgggcgttgcacaacttatccatgcctaagagttcgttttcag
aaagcagagggggagacttctttgcgtgattactcccaagactttgttactgttgaccca
ctgtgctatttcgatgatgtcaatcaatacatgtggcctaaagtgaatatagaaccagta
gagtctgtggaagcaaaagatcaagctatagaatgccaatcttctcagttgcagtcaact
tcgatatcttgtcaaggtgaaagctcaactcctatggagttggacagtgcaccttctgat
gcacctcagtttcagggatctcaagtggaagatcagacgcagcttcccgtgctgtctagt
ggttcagaacaacaagatgcttcctcctccgaaaaggaggatgcgctgcctagacttttg
tttcgtctcggagggcttgaactagaccgctctttggctgtataccaggctattctcttg
cacaaactgaaatcagaaaatgaaactaccaacggttcaaagcttagtggaccccactac
atcacttacgaaagggctgcacaacttggggattctagtaaaaatctggttccacccgat
tctatggaagataacgagtatcgcccattcttatcctacttgtttgcccatagacttgct
ttgcgcctcaaggggtcaagtcctcctgcctatgacatattgttcctgcttaagagtctg
gagggcataaacagatatctttttcacctgatttctctgggaaggattaatgcttttgga
gaaggtaggctggagaatttggatgatctgatggtgctagttcgtcctgtggcacattct
gaatttgttagcagtaagcttacagagaagttagagcagcagcttcgtgattcttttgct
gtgtcaacgtgcggtctgccaccatggtttaatgatctaatggattcatgttcatttctg
tttagttttgaagtcaaatcaaaatacttccgacttgcagcctttggttcacagaaaatc
catcatcacccacagcaccttagcaattcaaatggtgaagggcgcccagtaactggcagt
ttaccacgtaaaaagttcttagcttgccgtgaaaaaattctagagtctgctgcaaaaatg
atggagttatacggcaaccagaaggtggtcattgaggttgaatacagtgaagaagtcgga
actggtcttgggccaacgctggagttctatacgctagtcagtagggcatttcataatccg
gaacttggtatgtggaggagtgattgtagttccttggttggaaagccaagcgaacactca
ggggttttggcctctccttcaggactctttccacgcccttggtcaggtacatcagctgct
ttttcagatgtgctgcagaaatttgttctattggggacagtggtagcaaaggctctacaa
gatggacgagtcttagaccttcctttttccaaagccttctataaactaatcctcggacag
gagttgagttcatttgacatccactttattgaccctgcactttgtaaaacactggtggaa
ttgcaagctctggcccgtaggagaaaggttttcgcagaagcacagggtaattctcgtgca
gccaagtgtgatttaagtttccatggaacaaagattgaggacctttgtcttgaatttgcg
ttgcctggctacacggactatgatctcgctccccattctgataatgatatggtaagtttg
gataacctcgaggaatatatcaaggctattgtcaatgccacagtatgtagtgggatccaa
aaacaggttgaagcatttcggtctggatttaaccaagttttccctattgaacatcttcgg
attttcaatgaagaggagctggaaactatgttgtgtggagaacgcgatctctttaatatg
aatgaagtcttggatcacatcaagtttgatcatggatatacttctagcagcccaccagtt
gaaaatttattggagattctgcatgagtttgacaaggagcaacaacgagcctttctgcaa
ttcgtaacaggatctccccggctacctcatggcggtttagcgtctctcaatcctaaacta
acaattgtccgcaagcatggtagcgattcttcagagactgacctgcctagtgtgatgaca
tgcgccaattatctgaagcttccaccttattcttccaaagagaagatgaaggagaaactg
atgtatgccataactgaaggtcaaggttccttccatctctcttaa
DBGET
integrated database retrieval system
