Camelina sativa (false flax): 104768685
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Entry
104768685 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104768685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104768685
03012 Translation factors [BR:
csat03012
]
104768685
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104768685
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104768685
Translation factors [BR:
csat03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104768685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
T2SSE
ATPase
AAA_19
AAA_16
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
104768685
NCBI-ProteinID:
XP_010491018
LinkDB
All DBs
Position
20:1944106..1953004
Genome browser
AA seq
1161 aa
AA seq
DB search
MRFTKRISLFLGQTTKIHTRSLLGNPSLHRVFTVGPVSNSSAFLISSRSGDGVTRLFYPI
HRRFIGHTAEQFSDDEYECEFEEHKASSSVANVDEWKWKLSILLANGSEQEIVSRDKRDR
RDYEQISNLAKRMGLYSEIYGKVVVASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGL
LQEHLDRQQLLSGKTNEGVADSQPPKETEELPDESSDSFLDGSVMEKVLQRRSMRMRNMQ
RAWQESPEGRTMLEFRKSLPSFKDKERLLQAIARNQVIVVSGETGCGKTTQLPQYILESE
IESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGFKVRLEGMRGKNTHLLFCT
SGILLRRLLSDRNLNGVTHVFVDEIHERGMNEDFLIIVLKELLPRRPDLRLILMSATLNA
ELFSNYYGGAPTIHIPGFTHPVKAHFLEDVLEITGYKLTSFNQVDDYGQEKTWKTQKQLM
PRKRKNQITTLVEDALTKSNFESYNSRTRDSLSSWMPDCIGFNLIEAVLCHICRKERPGA
VLVFLTGWDDIRSLSDQIKAHPLLGDPNRVLLLMCHGSMATAEQRLIFERAPPNIRKIVL
ATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRLLPG
ECYHLYPKCVYDAFAEYQLPELLRTPLNSLCLQIKSLQVDSIAEFLSAALQAPESLAVQN
AIGFLKMIGALNEKENLTDLGKLLSILPVDPKLGKMLIMGAIFRCFDPILTIVSGLSVRD
PFLLPQDKKDLALSAKLRFSAKDYSDHMALVRAFEGWKDAEREGSAYEFCWRNFLSAQTL
QAIHSLRKQFNYILKEAGLVHDDSALNNKLSHNQSLVRAIICSGLFPGIASVVHRETSMS
FKTMDDGQVSLYANSVNSRFPTIPYPWLVFGEKVKVNAVLIRDSTGVPDSSLILFGGALS
TGVQVGHLKMLDGYIDFFMDPNLADSYVKLKGELDKLLQRKLEDPSMDIHKEGKYLMLAV
QELVAGDQCEGRFVFGRDTKKPSQPQIGENKHSKDGTNPKSLLQTLLMRAGHSPPKYKTK
HLKTNEFRALVEFKGMQFVGKPQRNKTLAEKDAAVEALAWLTHTSDNSSTGQQNEDADSP
PDVTDNMLKLLGGRRRRSKGK
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttcacgaaacgaataagcctcttcttggggcagacgaccaagattcatactcgt
tctctattgggaaatccatctttacacagggtttttaccgttggtccggtttctaactcg
tcagcgtttctgatttcgagtcgcagtggtgatggtgtcacaagattgttctacccaata
catcgtcgtttcattggtcacactgcggaacagttctctgatgatgagtacgagtgtgaa
ttcgaggaacataaggcttcatcttctgtggccaatgttgatgagtggaagtggaagtta
agtattctgttggccaatggtagcgaacaagaaattgtttccagagacaaaagggatcga
agggattatgagcagatttcaaatcttgccaagagaatgggactgtacagtgaaatttac
gggaaagtggtggttgcaagcaaggttcctcttcccaactaccggccagatttggatgat
aagcgaccacaacgggaggtggtacttcctttgagtttgcaaagaagggtagagggactt
ctccaggaacaccttgatagacagcagctactctcaggaaagactaatgaaggtgtagct
gattctcaacctcctaaagagactgaagaacttcccgatgaaagttctgattcgtttctc
gatggttctgttatggaaaaggtacttcagaggaggagtatgcggatgcgcaatatgcag
agagcctggcaggaatcccctgagggaaggacgatgctggaattccggaaatctttgcct
tcatttaaggacaaagaaagacttcttcaagctattgctcgaaaccaggtaatagttgta
tctggggagactggatgtggtaagacaactcaacttccccaatacattttggaatcagag
atagagtctggtcgaggagcattctgcaacatcatttgtacacaacctaggagaatatct
gccatggcagtttcagaaagagtgtcagctgaaagaggagaacctcttggtgaaacggtt
gggtttaaagttcggctagaaggaatgagaggaaaaaatacccatcttctattttgtaca
agtggtatcctacttagacgtctgcttagtgatcgcaatttgaatggtgtaacacatgta
tttgttgatgaaatccatgaaaggggcatgaatgaagatttcttaattatagtgttaaag
gagcttcttccacggcgtccagatctgagattgattctcatgagtgccactttaaatgct
gaactcttttctaattattatggaggggcaccaaccattcacattcctggcttcacacat
ccagtgaaggcacattttttggaggatgtactggaaataacgggatataagttgacctct
ttcaaccaagttgatgattatggtcaagaaaagacgtggaaaacgcaaaaacagttaatg
cctcgcaaaagaaaaaaccagatcactactcttgttgaggatgctctcaccaagtcaaat
tttgaaagctataactctaggacacgtgattcactttcgtcttggatgcctgactgcata
ggattcaatctcattgaggctgttctctgtcacatctgtcgaaaagaacgtccaggtgct
gtattagtatttttgacaggatgggatgacatcagatccctgagcgaccaaatcaaagcc
catcctctcttgggggatcccaatagggtcttactattgatgtgccacggctcaatggca
actgctgaacagagactcatttttgagagagcacctcctaatattcgaaaaattgttctt
gctacaaacatggcagaagctagtattacaataaacgatgtagtttttgtggttgactgt
ggcaaagcaaaagaaaccacctacgatgctttgaacaatacaccttgtttgctaccctca
tggatatctcaagcttctgctcgacagagaagaggaagagctgggcgtctgcttcccgga
gaatgctatcacttgtaccccaaatgcgtctatgatgcttttgcggagtatcaactacct
gaacttctgagaactcctttaaactctctctgcttgcaaattaaaagtcttcaggttgat
agcattgcagaattcttgtcagctgcacttcaggctccggagtctttggctgttcaaaat
gctattggattcctgaaaatgattggagcactgaatgaaaaggaaaatctaacggatctt
ggaaaactcttatcgattctccccgttgatcccaagctggggaaaatgctgataatgggt
gccatcttccgttgctttgacccgatcctgacaattgtatcagggctcagtgtcagagat
cctttccttctacctcaagacaaaaaggacttagctttatcagccaagttgagattctct
gccaaagactacagtgaccatatggcccttgttcgtgcctttgaagggtggaaagatgct
gaaagggaaggatcggcttatgagttctgttggaggaatttcctgtcagctcagacgctt
caggcaatacattcgctgaggaagcagttcaactatattctgaaagaagctggattagta
catgatgattcagctctcaacaacaagctaagtcacaaccagtccctggttcgtgctatc
atttgctctggcctattccccggaatagcatctgttgtgcacagagagacttccatgtca
tttaaaacaatggatgatggccaagtatcactatacgcgaattctgttaattcgcggttc
ccaacaattccatacccttggctagtctttggagagaaagtaaaggtcaatgctgtgctc
atacgggactccactggtgtccctgattccagtttgatactttttggtggtgcactgagc
actggagtacaggtgggacatcttaaaatgcttgacgggtacattgatttcttcatggat
ccgaatttggctgattcctacgtaaagctgaagggagaactagataagcttcttcaaaga
aagcttgaagatccaagcatggacatacacaaagaaggaaagtacctcatgcttgcagtt
caagaactcgtggcgggagaccaatgcgaagggagatttgtctttggtcgtgacacaaag
aagccaagccaaccgcaaataggagagaacaaacactccaaagacgggacaaacccaaag
agtctccttcagacacttttgatgagagcgggacactcgcctccgaagtacaagacaaaa
catctaaagacaaacgaatttagagcactagtggagtttaaagggatgcagttcgttggt
aaacctcagaggaacaaaacgctggctgagaaagatgcagctgtggaggccttagcttgg
ttgactcatacctctgataatagtagtacaggccagcaaaacgaggatgcagattcacca
cctgatgtaactgataacatgcttaaactcctgggaggacggcgtaggcggtccaaggga
aaataa
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