Camelina sativa (false flax): 104768990
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Entry
104768990 CDS
T05044
Name
(RefSeq) pre-mRNA-processing factor 17-like isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104768990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104768990
Spliceosome [BR:
csat03041
]
Complex C
Other components
Step II factors
104768990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD_LRWD1
WD40_MABP1-WDR62_1st
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
Beta-prop_Vps41
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
104768990
NCBI-ProteinID:
XP_010491405
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Position
3:complement(4573041..4575608)
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AA seq
572 aa
AA seq
DB search
MDLIQSYEEDEAVESSPESSPLRMLKAKSSAPEVDDTALALTVASVNQSNSKPINPTQHV
VVTNPTYEQLWAPMFGPAHPYAKDGIAQGMRNHKLGSVEDASIGSFMFDEQHNTFQRHGY
AADPSGMNYVGDVEALRKNDGESVYNVRQSEQKRRKIEKNKEERDGEEKKEEIEPEAENP
ASEAWLTRNRKSPWSRKREVVQGELTEEQKKYAEEHAKKKEDKGQQNEAKGEHYADKSTF
HGKEEKDYQGRSWIEAPKDAKANNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLLLSA
GMDCKVKIWDVYNSGKCMRTYMGHGKAVRDICFSNDGTKFLTAGYDKNIKYWDTETGQVI
STFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDINTGEITQEYDQHLGAVNTITFV
DNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISVHPNGNWLAAQSLDNQILI
YSTRERFQLNKKKRFAGHIAAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK
CHNGVCIGAEWHPLEQSKVATCGWDGLIKYWD
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggatctgattcaatcgtacgaagaagatgaagccgtcgaatcttcaccggaatcttca
ccgcttcgtatgttaaaggcgaaatcatctgcaccggaggttgacgatacagcgctagct
ctcacggtggctagcgtgaatcaatcgaattcgaagccgattaatccgactcaacacgtc
gtcgtgactaaccctacctatgagcagctctgggctccgatgttcggccccgcgcacccg
tacgcgaaagacgggatcgctcaggggatgcggaatcacaagctagggtctgtggaagat
gcttcgattggatcgtttatgtttgatgagcagcacaatacgtttcagaggcatggttac
gcggcggatccgtctgggatgaattacgtcggcgatgtggaggcgttgaggaagaacgac
ggtgaatcggtttataatgttcggcagagtgagcagaagcggaggaagattgagaagaac
aaagaggagagagatggggaagagaagaaggaagagattgagccggaggctgagaatccg
gcgagtgaagcttggcttacgaggaataggaagagtccttggtcgaggaagagggaggtt
gttcagggagagttaacggaggagcagaagaagtatgcggaggagcatgccaagaagaag
gaagacaagggacagcaaaacgaagctaaaggagagcattacgcggataagagtaccttc
catggcaaagaggagaaagattaccaagggaggtcttggattgaggctccgaaagatgca
aaggccaacaacgatcattgctacatcccaaaacgtttggttcatacatggagtggtcac
acgaaaggtgtttctgctattaggttcttcccaaagcatggacatttgcttctctctgca
ggtatggattgtaaggttaagatttgggatgtgtataactctggtaaatgcatgaggacc
tacatgggtcacggcaaagctgtgagggatatttgcttctccaatgatgggactaagttc
ttaactgctgggtatgataagaacattaagtattgggacacggagactggccaggttatc
tcgactttctccactgggaagattccatatgtggttaagctgaatccggatgatgacaag
cagaacattttgttggctggtatgagtgataagaagattgtgcagtgggatattaacacg
ggggagatcacacaggagtatgatcagcacttgggtgcagttaatacaatcacgtttgtg
gacaataacagaagatttgtcacatcgagcgatgataagtctctgcgagtgtgggaattc
ggaatcccggtggttatcaagtatatcagtgagccccatatgcactctatgccttcgatt
tctgtccaccctaatggaaattggcttgctgcgcagagcttggataaccagattctgatc
tacagtacccgagaaaggtttcagctgaataaaaagaagaggtttgcagggcacattgcc
gctggttacgcatgccaagttaatttctcgccagatggacggtttgtgatgtcaggagat
ggtgagggtaagtgctggttttgggactggaagagctgcaaagtctttaggactcttaag
tgtcacaatggagtatgcattggagccgagtggcatcctctggagcagagtaaagtcgca
acatgtggctgggacggcttgattaagtactgggactaa
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