Camelina sativa (false flax): 104769241
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Entry
104769241 CDS
T05044
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104769241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104769241
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104769241
Spliceosome [BR:
csat03041
]
Complex C
Other components
Step II factors
104769241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11
KH_DEAH11_1st
RRM_DEAH11
Helicase_C
IBR
DEAD
OB_NTP_bind
AAA_22
zf-C3HC4_2
zf-RING_UBOX
AAA_19
zf-RING_2
IBR_1
zf-C3HC4
KH_Vigilin
zf-RING_5
ResIII
AAA_30
Helicase_RecD
HA2_N
ABC_tran
AAA_29
Motif
Other DBs
NCBI-GeneID:
104769241
NCBI-ProteinID:
XP_010491706
LinkDB
All DBs
Position
20:4324507..4330576
Genome browser
AA seq
1775 aa
AA seq
DB search
MRSSFPLSDGGRSETDRRHPSFPSSSTNRCYSRSPQYSPPLNHRPTWNHHHSHYPNPNFP
PNYRRDRAPSSSTRPNFIVQLLHPRVNAAAKREEIKSLALLCDVPEESVHVPQFGCVAGS
FRFRQWVDARSAVVALWEYRLRGEHDFVPELIPNVVVPSDMDELKDRLRDLFSGHVISLM
ENGEGVKKVESEIDEKNRQVESFESKKGLKFEVFEKKKAVESERYLVVKRLEEFKNAMKS
IVRFLKRKDGYESDGKEEDDVAVFSLEGAYDWRRIHSLIRRECRRLEDGLPIYAYRRNIL
KRIHGEQITVLIGETGSGKSTQLVQFLADSGVAAGESIVCTQPRKIAAMTLADRVREESS
GCYEENTVRCTPTFSSTEQISSKVVFMTDNCLLQHYIKDRSLSGISCVIIDEAHERSLNT
DLLLALLKELLCRRVDLRLVIMSATADACQLSDYFFGCGKFLVNGRNFPVEIVYSPCDTE
ETSAVGGIASYVGHVVKMAVEIHKTEKEGTILAFLTSQAEVEWACERFIASSAVALPLHG
KLSMEEQFRVFQNHPGRRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILK
VCQVSQSSARQRAGRAGRTEPGRCYRLYSKNDFDSMSLNQEPEIRRVHLGVALLRILALG
VDNIADFDFVDAPVPESIAMAVQNLVQLGAVVKKNGVLELTQEGHCLVKLGLEPKLGKLI
LGCFRYRMGKEGIVLAAVMANASSIFCRVGNFDDKMKADRLKVQFCNHNGDLFTLLSVYK
EWASLPRERRNKWCWENSLNAKSMRRCEDTVKELEICIERELTLVSPSYWVWNPSAGTKH
DKHLKMVILASLAENVAMYTGYDQLGYEVALTGQQVQLHPACSLLAFGQKPSWVVFGELL
SIVDQYLVCVTAFDFEALYTLDPPPPFDASQMDERRLRVKKVVGCSSTVLKRFCGKSNRS
LLSIVSRARSICRNERICIQVDVDQNAILLYAPPLDMEKVSALVNDALECEKKWMRNECL
EKYLFHGRGQVPVALFGSGAQVKHLEVDQRFLTVDVLYYGDNVVDDRELLMFLEKRIDGC
ICSIHKFAANKDCDEKEKWGRLTFLTPESAMKAAEIQKFDFNGSVLILFPSLSTSGGIFK
MPYFPSVTAKILWPRRESTGRGCLKFPSGDIHSIFGGISNLEIGTNSAYIQRDQKSNDSI
LISGLDSDLSEAEVLDVLELKTGIRDLNFFIFRKNSVQCPSPTACEEELYKRIFAHMSAR
NPEPNCVKVQVFEPKEKDYFMRAYITFDGRYHLEAAKALQELNGQVLPGFLPWQKIKCEQ
LFQSSIVCSSSIYNTVKRQLNVLLARFERQRGGDWRLEPTHNGAYRVKICAYATRPIAEM
RRELEELVRGRPINHPGLTPRVLQHLMSRDGINLMRKIQQETETYIVLDRHNLTVRICGS
SQKIAEAERELVQSLVAYHESKQLEIHLRGPDIRPDLMKEVVRRFGPELQGIKEKVHGVD
LKLNTRYHVIQVHGSKEMREEVQKIVNELAREESAMGEKPDDIEVECPICLSEVEDGYSL
EGCSHLFCKACLLEQFEASMRNFDAFPILCSHVDCEAPIVLADMRALLSQQKLDELFRAS
LSSFVTSSDGKFRFCSTPDCPSVYRVAGPQESREPFICGACNAETCTRCHLEYHPLITCE
RYKLFKENPDLSLQDWAKGKDVKECPICKCTIEKTDGCNHLLCRCGKHICWTCLDVFTEA
APCYAHLRTIHGGIGGVGDLVDLDIPLAELGFPRP
NT seq
5328 nt
NT seq
+upstream
nt +downstream
nt
atgaggagctcttttcctctttccgacggtggaagatcggagactgatcgtcgtcatcct
tcgtttccctcatcctccacgaaccgttgttactctcgctctccacagtactctccgccg
ctcaaccaccgtcctacttggaaccaccatcactctcactaccctaaccccaatttcccg
ccaaattacagacgcgatcgggctccctcgtcgtctactaggcccaatttcatcgttcag
ctgcttcacccgagggttaacgccgccgctaagagggaagagatcaagagtctcgctttg
ctctgcgatgtcccggaggagtctgttcatgtgcctcagttcggttgtgtcgccggaagt
ttcagatttcgtcagtgggtcgatgcgcgttctgctgtagtggcgctttgggagtatcgg
cttcgaggggaacatgattttgttcctgagctgattcctaatgttgttgttccttctgat
atggacgagcttaaagacaggcttcgtgatcttttctcgggtcatgtgatttcgcttatg
gagaacggtgaaggtgttaagaaggtggaaagtgagattgatgagaagaatcgtcaagtt
gagtcctttgagtctaaaaagggtcttaaatttgaggtttttgagaaaaagaaggctgtt
gagtcggagaggtatttggttgtgaagcggcttgaagaatttaagaatgctatgaagagt
attgtgagattcctgaaaagaaaagacgggtatgagtctgatggtaaggaagaagatgat
gtggccgtgtttagtttggaaggggcttatgattggagacgtattcatagtttgattcgt
agggagtgtagaaggctagaggatggactacctatctatgcctatcgccggaatattttg
aagcggattcatggtgaacagataacggtgttgattggagaaactggttcagggaagagc
actcagttggttcagttccttgctgattctggagttgctgctggtgagtcgattgtttgt
acacaaccacggaagattgctgccatgacattggctgatcgggtcagagaagaaagcagt
ggttgttatgaggaaaacactgtccgttgtactccaactttttcatctacggagcagatt
agttccaaagttgtattcatgacagataattgtctgcttcaacactacatcaaagatagg
agtttatctggcatttcatgcgttattatcgatgaagcccatgaaagaagcttaaataca
gaccttcttctggcattgcttaaggagttgctatgcagaagggttgacctaaggcttgtt
atcatgtctgccacagccgatgcctgccaactttcagactatttcttcggttgtggaaaa
tttctggtcaatgggaggaactttccggtggagattgtatattccccttgtgacacagag
gagacttctgctgttggcggcattgcttcatatgttggtcatgttgttaagatggctgtg
gaaatacataaaacagagaaagaaggaaccatacttgcattcttgacttcccaagccgag
gtagaatgggcatgcgaaaggtttatagcttcgtctgctgttgctttgcctttgcatgga
aagctttcaatggaagaacaatttagggttttccagaaccatcctgggagacgaaaagtg
atatttgccacaaatattgcagagacgtcactgactattcctggtgtcaagtatgtaatt
gattctgggatggtgaaagagagtaaatatgaacctagaacgggtatgagcatcctcaag
gtgtgccaggtcagtcagagttctgctcgacaacgtgctggtcgtgctggaaggacagaa
cctggaagatgttacagactgtactcaaaaaacgattttgattcaatgagtcttaatcag
gaacctgaaattcggagggtccatcttggtgtagcacttttgaggattcttgctctcggt
gtagacaacatagcagattttgactttgttgacgcgcctgtcccagaatccattgcaatg
gctgtccaaaaccttgttcagctgggtgccgtcgtaaagaaaaatggtgttcttgaatta
acacaggaagggcattgtttagtcaagctgggtctggagccaaagcttggaaagttaatt
ttaggctgctttagatacagaatgggcaaagaggggattgttcttgctgctgtcatggct
aatgccagtagtatattttgcagagttggcaacttcgatgataaaatgaaagctgatcgc
ctaaaggtgcaattctgcaatcataatggagacctgttcactcttctttcggtgtacaaa
gaatgggcatctctgccacgagagagaagaaacaaatggtgctgggaaaatagcctgaat
gccaaatcaatgaggagatgtgaagacacagtcaaggaactggagatatgcattgagaga
gaacttactcttgtcagtcctagttactgggtttggaatccaagtgcgggtactaaacac
gacaagcatttgaaaatggttatacttgcatctcttgcagaaaatgtggcgatgtacact
ggctatgatcagcttggatatgaggtggcattgactggtcaacaagttcagttacatcca
gcgtgttccttgctagcatttggccagaagccaagctgggttgtttttggtgaacttctg
tcgattgtggatcagtacttggtatgtgtaactgcatttgattttgaggctttgtatacg
cttgatccaccaccaccttttgatgcatctcagatggatgagcggaggctccgagtgaaa
aaagtggttggttgtagcagcactgtgctaaaacgattttgtgggaaatctaatcgtagt
ctgctttcaattgtttctcgtgctaggtctatttgtaggaatgaaaggatttgtattcaa
gtcgatgttgatcagaatgcgattctactgtatgcgcctccactcgacatggaaaaagtg
tcagcccttgtgaacgatgcattggaatgtgaaaagaaatggatgcgtaatgaatgtttg
gagaagtatctatttcatggtcggggacaagtacccgttgcactgtttggatctggtgct
caggtaaagcatcttgaagttgatcagaggtttttgacagtcgatgtactttattatggc
gacaatgttgttgatgacagagagcttctgatgtttctggagaagaggattgatgggtgt
atttgctctattcataagtttgctgcgaacaaagactgtgatgagaaggagaagtggggc
agactaacctttctcacgcctgaatctgcaatgaaggcagccgaaattcagaaatttgat
ttcaatggatcagttcttatattatttccatcgctgtcaactagtggaggaattttcaag
atgccttatttcccttccgtgacagctaagattctctggccgcgaagggaaagcactggt
agaggatgtcttaagttcccttccggagatattcacagtatatttggtgggatctccaac
cttgagataggaacaaattctgcctatattcaaagagatcaaaagtccaatgattctatc
ttgataagtgggcttgacagtgatctttcggaagcagaagttttagatgttttggagttg
aaaactgggattagagatctgaattttttcattttcagaaaaaacagtgtgcagtgtcca
tctcctactgcttgcgaagaagagttgtataagagaatatttgcgcatatgtcagcaagg
aatccagagccaaactgtgtcaaagttcaagtttttgaaccaaaagaaaaagattatttc
atgcgagcatatattacttttgacgggagatatcatttggaagctgcaaaagctttgcag
gagttaaatggacaggtgctacctggatttcttccatggcagaagattaagtgtgaacaa
ttgtttcagagctccatagtctgctcctcttctatctacaacactgtcaaaagacaattg
aatgttttattagcaaggtttgagagacaacgagggggtgactggcgtctggaaccaact
cataacggtgcttatcgtgttaaaatttgtgcttatgcaacaagacccattgcagagatg
cgaagagaacttgaagaactcgtaagaggaagacccataaaccatccaggcttaacccct
agagtcctgcagcatcttatgtccagagatggtattaatctgatgcggaagatccaacag
gagactgaaacttacattgtattagacaggcacaatctcacagtacgcatttgtggatca
agtcagaaaattgccgaggctgaacgagaactggttcagtcacttgtggcttatcacgag
agcaagcaacttgaaatccatctccgaggtcctgatatccgtcctgacctcatgaaggaa
gtggtgaggcggtttggtcccgagctccaaggtatcaaagaaaaggtacatggtgtggat
ctgaagctcaacacccggtaccatgttattcaggttcatgggagcaaagaaatgagggag
gaagtacaaaagatagtcaatgaacttgcacgagaagagagtgcaatgggtgaaaaacca
gatgacatagaagttgaatgccccatttgcttgtctgaagtcgaagatggctattctctt
gaaggatgttcacatctcttctgcaaagcttgtttgttggagcaatttgaggcatcgatg
agaaactttgacgcattcccaatactttgttctcacgttgactgtgaagctccaatagta
ctagctgatatgagagccctcttatcacaacagaagctcgatgaactcttccgagcatcc
ttgtcctcctttgtaacatctagcgacggaaagttccggttttgctccacacctgactgc
ccttccgtctaccgtgtagctggacctcaagaatccagagagccattcatatgtggagca
tgtaacgcagaaacatgcacaaggtgtcacctcgagtatcacccgttaatcacatgtgaa
aggtacaaactgttcaaggaaaatccggacttgtcgctacaggactgggcaaaagggaag
gatgtgaaggagtgtccgatttgcaagtgcacgatagagaaaactgatgggtgtaaccat
ctgctgtgccgttgtgggaagcacatttgctggacctgcttagacgtattcactgaagca
gcaccttgttatgcccatttaaggacaattcatggcggaatcggcggggttggtgatctc
gtggatcttgatatccccttagcagagctcggtttccccaggccttga
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integrated database retrieval system
