Camelina sativa (false flax): 104769336
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Entry
104769336 CDS
T05044
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03015
mRNA surveillance pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104769336
09122 Translation
03013 Nucleocytoplasmic transport
104769336
03015 mRNA surveillance pathway
104769336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104769336
03041 Spliceosome [BR:
csat03041
]
104769336
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104769336
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104769336
Spliceosome [BR:
csat03041
]
Complex C
Other components
EJC/TREX
104769336
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104769336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
104769336
NCBI-ProteinID:
XP_019098034
UniProt:
A0ABM1RG96
LinkDB
All DBs
Position
20:complement(4805676..4809332)
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AA seq
427 aa
AA seq
DB search
MGDAKDNEAYEEELLDYEEEDEKFPDSGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVL
CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLAL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASDSDSGVLKQVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgctaaagacaacgaagcctacgaggaggagctcttggactatgaagaagaa
gacgagaagtttccagattctggaaacaaagttaacggcgaagccgtgaaaaaaggttac
gtgggaatacacagttctggattcagagactttctcttaaaaccggagcttctccgagct
attgttgactcaggatttgaacatccatctgaagttcaacatgaatgtatccctcaagct
atcttgggcatggatgttatttgccaagcaaaatctggtatggggaagactgctgtgttt
gttctgtctactcttcaacagattgaaccttctcctggacaagtttctgcacttgtcttg
tgccatacaagagagttggcttaccagatctgcaatgagttcgtgcgattcagtacctat
ctgcctgatacaaaggtttcggtgttctatggtggagtcaacattaagattcacaaagac
ttgttgaagaatgaatgtcctcatattgttgttggtacgcctggtcgtgtgcttgcactt
gccagggacaaagatctctctttgaaaaatgtgaggcattttattcttgacgagtgtgat
aaaatgcttgagtcacttgacatgcggagggatgtgcaggagattttcaagatgactcct
cacgacaaacaagtaatgatgttctcagcaaccctcagcaaagagatacgcccagtctgc
aagaaatttatgcaagatccaatggaaatatatgttgatgatgaagccaagctgactctt
catggacttgtccagcactacatcaaattgagcgagatggagaaaaaccgcaagctgaat
gaccttcttgatgcgttggacttcaaccaagttgtcatatttgtgaagagcgtgagcaga
gctgcggagctaaacaagttgctggtagaatgcaatttcccctcaatttgcatccactct
ggcatgtctcaagaagagaggttgactcgctacaaaagcttcaaggaagggcacaagagg
atccttgtggcgactgatttggtagggagaggcattgacattgagcgtgtcaatattgtt
atcaactatgacatgccagattctgcagatacatatcttcacagggttgggagagctggt
agatttggaacaaaaggtctagctatcacatttgttgcatcggattcagattctggtgtt
cttaagcaggtacaagagaggtttgaggttgatataaaggaactccctgagcagattgat
acctccacatacatgccgtcttaa
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