Camelina sativa (false flax): 104769337
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Entry
104769337 CDS
T05044
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03015
mRNA surveillance pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104769337
09122 Translation
03013 Nucleocytoplasmic transport
104769337
03015 mRNA surveillance pathway
104769337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104769337
03041 Spliceosome [BR:
csat03041
]
104769337
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104769337
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104769337
Spliceosome [BR:
csat03041
]
Complex C
Other components
EJC/TREX
104769337
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104769337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
104769337
NCBI-ProteinID:
XP_010491834
UniProt:
A0ABM0XW20
LinkDB
All DBs
Position
20:4809659..4821428
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AA seq
427 aa
AA seq
DB search
MGDARDNEAYEEELLDYEEEDEKVLDSGSKVNGEAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVL
CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLAL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSDMEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASSSDSEVLNQVQDRFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgctagagacaacgaagcctacgaggaggagcttttggattacgaggaagaa
gacgagaaggtcctagattctggaagtaaagttaacggcgaagccgtgaaaaaagggtac
gtgggaatacacagttctggattcagagacttccttttgaaaccggagcttctccgagct
attgttgactcaggttttgaacatccatccgaagtgcaacatgaatgtatccctcaagct
attttgggcatggatgttatctgtcaagcaaaatctggtatgggaaagactgctgtgttt
gtcctttcgactctgcaacagatcgaaccatctcctggccaggtttctgcacttgtcttg
tgccatacaagagagttggcttaccagatctgcaatgagttcgtgcgattcagtacctat
cttcctgatacaaaggtgtcggtgttctatggtggagtcaacatcaaaattcataaagac
ttgctgaagaatgaatgtcctcacattgttgttggtacacctggtagggtgcttgcactc
gccagggacaaagatctctctttgaagaatgtgaggcattttattcttgacgagtgtgat
aaaatgctcgagtcacttgacatgcggagggatgtgcaggagatttttaagatgactcct
cacgataagcaagtaatgatgttctcagctacgctcagcaaagagatacgcccagtctgc
aagaaatttatgcaagatccaatggaaatatatgttgatgatgaagccaagttgactctt
catggacttgtccagcactacatcaaactgagcgacatggagaaaaaccgcaagctgaat
gaccttcttgatgcgttggacttcaaccaagttgtcatatttgtgaagagcgtgagcaga
gctgcggagctgaacaagttgctggtagaatgcaatttcccctcaatatgcatccactct
ggcatgtctcaagaagagaggttgactcgctacaaaagtttcaaggaagggcacaagagg
atccttgtggcgactgacttggtaggaagaggcattgacattgagcgtgtgaacattgtt
atcaactacgacatgccagattctgctgatacatatcttcacagggttgggagagctggt
agatttggaaccaaggggcttgctatcacatttgttgcatcttcctcggattcggaggtt
cttaatcaggtgcaagataggtttgaggttgatataaaggaactccctgagcagattgat
acctccacatacatgccatcttaa
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