Camelina sativa (false flax): 104770988
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Entry
104770988 CDS
T05044
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
csat
Camelina sativa (false flax)
Pathway
csat03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104770988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104770988
03036 Chromosome and associated proteins [BR:
csat03036
]
104770988
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
104770988
Coactivators
SAGA/TFTC/STAGA complex
104770988
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
104770988
STAGA complex
104770988
TFTC complex
104770988
SAGA complex
104770988
SLIK complex
104770988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_Nup120_160
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_RIG_1st
RAB3GAP2_N
Nucleoporin_N
Beta-prop_DCAF12
WD40_like
Cytochrom_D1
LisH
FdhD-NarQ
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
104770988
NCBI-ProteinID:
XP_010493762
LinkDB
All DBs
Position
20:16341255..16346652
Genome browser
AA seq
668 aa
AA seq
DB search
MDPEQINEFVVGYLKKKGFSSAAKDLEDFHHHNNGSSLSSIDYHNDPELTKLIRSFSQQE
DDPTRYRECYSKLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARGFFNSFR
KDHEMVHLRDLQKLEGVLAPSHLEEMEFARSLRKSKVNIKICQYSYDLLLQYLHRTESTL
MLGIINEHINFQVYSGQPTSSSDDIEAVTIVGSFQDTANHINQKEIQWGLLEDSLEDRLE
KTGGLLSDSEKGQGESKDGDADDSKKRPTDIGKQGSSIKKLKKDKAGNATAKVARLETST
VPPTPRVKPELALPVMSTDVEQTILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNCASIS
HDGSLVAGGFSDSSIKVWDMAKIGQTGSGALQGENDTNDPTIGPNGRRNYTLLLGHSGPV
YSATFSPPGDFVLSSSADTTIRLWSTQLNANLVCYKGHNYPVWDVQFSPFGHYFASCSHD
RTARIWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFI
GHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLAYSGEGSLL
ASGSADCTVKLWDVTSSTKSTKAEEKNVNSNRLRSLRTFPTKSTPVHALRFSRRNLLFAA
GAISKPAS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatccagagcaaatcaacgagttcgttgtaggttacttgaagaagaaaggttttagt
agcgctgctaaagacctcgaagactttcatcaccacaacaatggtagcagtttgagttct
atcgactatcataacgatcctgagcttaccaagctcattcgctccttttcccaacaagaa
gatgatccaactcggtaccgtgagtgttacagcaaattaaggtcatgggcatataattca
ctggatttatataagcatgaattgctccgagtgatgtatcctgtgtttattcattgttac
atggatctggtgggaaaagggcacactcaagaggcaagaggcttctttaacagcttccgc
aaagatcatgaaatggtacacttacgggatcttcagaaactggaaggcgttcttgctcct
tctcatctagaggagatggagtttgctcgttctcttagaaaaagcaaggtcaacatcaaa
atttgtcagtattcatatgatctgttacttcagtatctacatagaacagaatcaacttta
atgcttggtattattaacgagcacatcaatttccaagtctactcgggacagcctacttcc
tcatccgatgacatagaggctgtcaccattgtcgggagttttcaggacacagctaatcac
atcaatcaaaaagaaatacagtggggattgcttgaagactcgctagaagatcgccttgag
aagactggaggtctactgtctgattctgagaagggacaaggagaaagtaaagacggggat
gcggatgatagtaagaaaagacccactgatattggaaagcaaggctcttcaataaaaaag
ttaaagaaagacaaagcgggaaatgcaacagcaaaggttgcacgtctagagaccagcaca
gtgccaccaacgccacgtgtaaaaccagaacttgccttgccagtaatgtctacagatgta
gagcaaactatccttgaagaccttagaaaccgtgtgcagttgagtagtgttgcaatgcca
tctgtcagcttttatacatttgttaatactcataacgggttaaactgtgcatctatatct
catgatggatctctggttgctggtgggttctcagattcatcaataaaggtctgggacatg
gctaagataggacaaactggcagtggtgctttgcagggtgaaaatgatacaaatgatcca
accataggaccaaatggaagaagaaattatacattattactgggtcactcagggcctgtt
tactcggccactttcagtcctccaggagattttgttttgtcttcttcagcagatacaaca
atacgactctggagcacacaattaaatgccaatcttgtgtgctacaagggtcataattac
cctgtatgggatgtccagtttagcccttttgggcattactttgcaagctgttctcatgat
cgtactgcacggatttggtcaatggaccgaatacaacctctccgaataatggcagggcat
ctatccgatgtcgattgtgtacagtggcatcccaattgtaactacattgcaaccggctct
agtgataagacagttagactctgggacgtgcaaacaggggaatgtgttcgtatattcatt
gggcacaggagtatggttttatcattggcaatgtctccagatgggagatatatggcatcc
ggtgatgaagatggcaccataatgatgtgggacctatcaacagctcgctgcatcacacct
ctcatgggccataactcatgtgtctggagtctcgcttacagcggtgagggctctcttctg
gcctctggatccgcagactgcacagtgaaactgtgggacgtcacctcaagtactaaatca
acaaaggccgaggaaaagaatgtgaactcgaacagattgcgctcactcagaactttcccc
accaagtccacaccagttcacgctctccgattttctcggaggaatttgttgtttgctgca
ggagcaatctctaaacccgcaagctga
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