KEGG   Camelina sativa (false flax): 104771190
Entry
104771190         CDS       T05044                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
csat  Camelina sativa (false flax)
Pathway
csat03018  RNA degradation
csat03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104771190
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104771190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csat03019]
    104771190
   03041 Spliceosome [BR:csat03041]
    104771190
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104771190
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     104771190
Spliceosome [BR:csat03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    104771190
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 104771190
NCBI-ProteinID: XP_010493981
UniProt: A0ABM0Y1D1
LinkDB
Position
20
AA seq 129 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGIEDGGARGRGRGTSMGKMGG
NRGAGRGRG
NT seq 390 nt   +upstreamnt  +downstreamnt
atgcttcctctttcgctcctcaaaactgctcaagggcatcctatgcttgttgagcttaag
aatggagagacctacaatgggcatttggtgaattgtgatacttggatgaacatccatctg
cgtgaagtcatctgtacatcaaaggacggagacaggttttggagaatgcccgaatgttat
atccgtggtaacacaatcaagtatcttcgagttcctgatgaggtgattgataaagttcaa
gaggagaagacccgcacagataggaaaccaccaggggttggacgcggaagaggacgtggt
attgaagatggaggggccagaggccgaggccgaggaacttcaatggggaagatgggtggt
aacagaggagcaggtcgtgggcgtggttaa

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