Camelina sativa (false flax): 104771372
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Entry
104771372 CDS
T05044
Name
(RefSeq) 5'-3' exoribonuclease 2-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03008
Ribosome biogenesis in eukaryotes
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104771372
09123 Folding, sorting and degradation
03018 RNA degradation
104771372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104771372
03019 Messenger RNA biogenesis [BR:
csat03019
]
104771372
03009 Ribosome biogenesis [BR:
csat03009
]
104771372
03016 Transfer RNA biogenesis [BR:
csat03016
]
104771372
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104771372
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104771372
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
Pre-60S particles
RNases
104771372
Transfer RNA biogenesis [BR:
csat03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
104771372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
104771372
NCBI-ProteinID:
XP_010494189
UniProt:
A0ABM0Y1U4
LinkDB
All DBs
Position
20:21410188..21417522
Genome browser
AA seq
1007 aa
AA seq
DB search
MGVPSFYKWLIERYPLILQEVIEEEPLEVNGGVTIPIDTSKPNPNGYEYDNLYLDMNGII
HPCFHPEDKPSPTTFTQVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRARRF
RAAKDAAEAAAEEEQLRQEFEREGKKLPPRVDSQVFDSNVITPGTEFMSTLSFALRYYIH
IRLNSDPGWKNIKVILSDANVPGEGEHKIMSYIRCNKNHPGYNPNTHHCLYGLDADLIML
SLATHEIHFSILREVVFFPGEQDKCFLCGQMGHRAADCEGKMKRKAGEMLDNTEPDVAVK
KPYEFVNIWILREYLEHDMQKPSKRSKKNLDRLIDDFIFICFFVGNDFLPHMPTLDIREG
AIELLMSVYRSHFSSAKKYLTDASKLNLSNVERFIQAVGMYENKIFLKRALVHQRQSERF
CRDKARDSAQASRQFSGKLVQLDAVDEVSDLLHSSPPKKYLRLSLDDNTGVTNVETENSI
KTEELDNREDLKFKLKKLLRNKADVFSSGNGEQDKVRLGVSGWRERYYEEKFTAKSVEEM
EQIRRDVVLKYTEGLCWIMHYYYHGVCSWKWFYPYHYAPFASDLKGLDRLDIKFELGSPF
KPFNQLLSVLPSASAHALPECYRTLMTDPESAIADFYPADFEIDMNGKRYSWQGIAKLPF
VDERRLLETIALVEKSLTTEEIRRNSVLFDMLFVVASHPLAELIRSLNSHTNNLSSEERA
TIMEKIDPALSDGMNGYVASCGGDSQPPCFSSPVEGMEDVLANQVICAIYKLPEDIRGSE
ITHQIPSLVIPKKTINLVDLKGESLLWHEDGDKRRAPARIMKTKRYNPEGSISGDRLGKA
AHRLVLQTINAQPDNAHINTEPALCPNTVFQNQRASEKIPAFQENKIQWVSPQSQITPKK
MKSPQSQNTWKKKRSSKRLEDLKKKNPLSVIPLKMKKSKNPRGKKENQIPQTKPTKKQKK
RAIHLRMVEETRKRKEQQKIKIAKKAQMVPNTLELRSKTLPRSSSTI
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccgtcattctacaaatggttaatcgaaaggtatccgttgattctacaagaa
gtcattgaagaagaaccactcgaggttaatggcggcgtcacgatcccaatcgatacaagc
aaacctaatcctaatggttacgagtatgacaatctatatctcgacatgaacggaatcatt
catccatgtttccatcctgaagacaagccttctcctactacgtttacccaagtgtttcaa
tgtatgttcgattacattgataggcttttcgtgatggttcggcctcggaagctcttattc
atggctatcgatggtgttgctccaagggctaaaatgaatcagcagagagctagacggttt
agagcagcaaaagatgcagctgaagcagcagctgaagaagagcagctacggcaagagttt
gagagagaagggaagaagttgcctcctagagtggattctcaagtttttgactctaatgtt
ataactcctggaacagagttcatgtctactctgtcatttgcgttgcgatactacattcac
attagactaaattctgatcctggatggaaaaatattaaggttatactctcggatgctaat
gttcctggtgagggggaacacaagatcatgtcatacatacgttgtaacaaaaaccatcct
ggttataacccaaacactcatcattgtctatatggtttggacgctgatttgatcatgctg
tctttggccacccacgaaattcatttttcaatccttcgtgaggttgttttctttcctgga
gagcaagacaaatgcttcttgtgtggtcagatggggcaccgagcagcagattgtgagggc
aagatgaagaggaaggcaggagaaatgcttgataacaccgagccagatgttgcggtgaag
aagccatatgagtttgtcaatatctggatacttcgagagtatttggaacacgacatgcag
aaacctagcaagcgatcgaaaaaaaatttggaccgcttgattgatgacttcatcttcatc
tgttttttcgttgggaatgatttcctgccacatatgcctacgcttgatatacgagagggt
gctatagaattgctgatgtctgtgtataggagtcacttcagttcagcaaaaaaatactta
accgatgcaagcaagctgaacttaagtaatgtggagcgtttcatccaggccgttgggatg
tatgaaaataaaatatttctgaaaagagcactagtacatcagaggcaatcagaaaggttt
tgtcgtgacaaagctcgtgacagtgctcaagcaagcagacaattctctggcaagttggtg
caattagatgctgtagatgaagtgtctgatttattgcattcctcaccaccaaaaaaatat
ttgcgtctgtctttggatgataacactggtgtgacgaatgttgaaacagaaaatagcatc
aaaacagaagaactagataacagagaagacttaaagtttaagcttaagaaactgttgcgg
aataaagctgatgtgttcagctcaggaaatggagaacaagataaggttaggctaggtgta
tcaggatggagggagagatactacgaagagaaattcacagctaagtctgttgaggaaatg
gaacaaatacgtagagatgttgttttgaagtatacagaaggtctttgttggataatgcat
tattattatcatggtgtttgttcctggaaatggttttatccatatcattatgcacctttc
gcatcagatctcaagggccttgataggctagatatcaagtttgaactaggttccccgttt
aaacctttcaatcagcttttgtctgttcttccatctgcaagtgcacatgctctcccagag
tgctataggacattgatgacagatccagagtccgctatagctgatttttatcctgccgat
tttgagattgacatgaatggaaaacgctattcttggcagggtatagcgaaactgcctttt
gttgatgaaaggcgtcttctggagacaattgcactagtggagaaatcactgacgaccgaa
gaaattcgaagaaacagtgtgctatttgacatgctctttgtggttgcgtctcatcctctt
gctgaactcatccgttctcttaatagccataccaacaacttgagcagtgaagaacgagca
actatcatggagaaaattgaccctgcactaagtgatgggatgaatggttacgtagcttca
tgtggtggagatagtcagcctccatgtttcagctcccctgtcgagggcatggaagatgtt
ttagccaatcaagtcatttgtgccatatataaacttccagaagatatcagaggcagcgag
atcactcatcaaattccaagtttggtaatccctaaaaagactataaatctagtggatttg
aaaggtgaaagtcttctatggcatgaagatggtgacaaaagacgagctcctgcaaggatt
atgaaaaccaaaaggtataatccagaaggatctatttccggggataggcttgggaaggca
gcacacagacttgtgttgcaaacaataaatgcccagcctgataatgcgcacattaatacg
gaaccagcattgtgtccaaacactgttttccagaaccaaagagcgtcagaaaaaatccca
gcctttcaagaaaataagatccaatgggtaagccctcagagtcaaatcactccaaagaag
atgaaaagccctcagagtcaaaacacttggaagaaaaagagaagctctaagaggctagaa
gatttgaagaagaaaaaccctctgagtgtaatccctctgaagatgaagaaaagtaaaaac
cctcgggggaagaaggaaaaccaaatccctcaaactaaacccactaagaagcagaagaag
cgggcaatacacctacgcatggtggaagagacgagaaagagaaaagagcagcaaaaaata
aagatagccaaaaaggcacaaatggttcccaacacgcttgagcttcgatccaaaacgctt
cctcgatcatcttcaacaatatga
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