Camelina sativa (false flax): 104771411
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Entry
104771411 CDS
T05044
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X5
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
csat
Camelina sativa (false flax)
Pathway
csat04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104771411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csat04131
]
104771411
Membrane trafficking [BR:
csat04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104771411
Hops complex
104771411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf_RING_Vps8
zf-RING_11
Nup54_57_C
zf-rbx1
zf-C3HC4
zf-RING_Vps41
zf-RING_5
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
104771411
NCBI-ProteinID:
XP_010494232
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All DBs
Position
3:5604190..5611909
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AA seq
988 aa
AA seq
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MDQGRQVFSVDLLERYATKNRGMITCMAAGNDVIVLGTSKGWIIRHDFGLGNSNDVDLSV
GRAGEQSIHKVFVDPGGSHCIATVTGVGGAETFYTHAKWPKPRVLSRLKGLVVNAVAWNR
QQITEVSTKEIILGTQDGQLFEMAVDEKDKREKYIKFLFELEELPEAFMALQMETANISS
GMRYYVMAVTPTRLYSFTGIGTLESVFASYKERAVHFMELPGEIPNSELHFFIKQRRAVH
FAWLSGTGIYHGGLNFGAQHSYPNGDENFVENKALLNYSKLSDGTEAVKPGSMALSEYHF
LLLIGNKVKVVNRISEQIIEELQFDTTADSVSRGIIGLCSDASAGLFYAYDQNSIFQVSV
IDEGRDMWKVYLDLKVYAAALANCRDPLQRDQVYLVQAEAAFTNKEYLRAASFYAKINYV
ISFEEVTLKFISINEPEALRTFLLRKLDNLSKDDKCQITMISTWATELYLDKINRLLLED
DTAIENRDSEYHSVIQEFRAFMSDCKDVLDEATTMKLLESYGRVEELVYFANLKEQYEIV
VHHYIQQGEAKKALDVLQKSSVSDELQYKFAPELIMLDAYETVEAWMANKNLNPRRLITA
MMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGIHNLLLSLYAKQEDDSALLRFLQCKF
GKGRENGPEFFYDPKYALRLCLKEKRTRACVHIYSMMSMHEEAVALALQIDPELAMAEAD
KVEDDEDLRKKLWLMVAKHVVKQEKGVKRENIRKAIAFLKETDGLLKIEDILPFFPDFAL
IDDFKEAICSSLEDYNKQIEQLKEEMNDATRGADNIRNDISALTQRYAVIDRDEECGVCK
RKILMMTGDFRMAQGYSSAGPLAPFYVFPCGHSFHAQCLITHVTSCAHEEQAEHILDLQK
QLTLLGSETRRDINGSRSDEPITNATTADKLRSELDDAIASECPFCGELMINEITLPFIK
PEDSLNSASWDLRPPTNLANQRTISLPV
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagggaggcaagtattttcagttgatctcctagagagatatgccacgaagaat
cggggaatgattacatgtatggctgctgggaacgatgtaattgttctgggaactagtaaa
ggatggattatacgccatgacttcggacttggcaattctaatgatgttgatctttctgtt
ggtcgagctggggagcaatcgattcataaggtttttgttgatcctggtggtagccattgc
attgctactgtcactggtgttggtggagctgaaaccttttatactcatgctaagtggcct
aagcctcgtgtcttgagccgcttgaaaggtttggttgttaatgccgtcgcttggaataga
caacagattactgaagtttctaccaaggagatcattctgggcactcaggatgggcagctg
tttgagatggccgtagatgagaaggacaagagagagaagtacatcaagtttttgtttgaa
ctagaagaacttcccgaggctttcatggctttgcagatggaaacggccaacattagcagt
gggatgaggtactatgtgatggctgtaactcccactcgtctctactcctttaccgggatt
ggaacattagaatctgtttttgctagttataaagaacgtgctgttcattttatggaactt
cctggtgaaataccaaacagtgaactacatttctttataaagcaacgaagagcagtgcat
tttgcatggctttcaggaacaggaatttatcatggtggtctgaactttggagctcagcac
agttatcctaatggtgatgaaaactttgtggagaacaaagcactcttgaattactcaaaa
ttgagtgatggcactgaagcagtcaagcctggttcgatggcactctctgagtatcatttc
ttgcttcttattggtaataaggttaaggttgtgaatcggataagtgagcaaatcattgaa
gagctccagtttgatacaacagcagattcagtttcgaggggcattattggactttgcagc
gatgcctctgcaggcctcttctatgcatatgatcaaaattcgatattccaggtttctgtg
attgacgaaggccgagatatgtggaaggtgtacctagacttgaaagtctatgctgcagct
ttagcaaactgtcgtgaccctctccagagagaccaagtttatttagttcaggcagaagct
gcattcaccaacaaggaatatctgcgagcagcatcattctacgccaaaatcaattacgta
atatcttttgaggaggtcactttgaagtttattagtataaatgaaccggaagctttgaga
acattcttgttgcggaagcttgataatctttcaaaggatgataaatgccaaataaccatg
atatcaacctgggcaactgagctatatttggacaagataaatcggctgcttttggaagat
gacactgctatagaaaatcgcgactcggagtaccactcagtcattcaagaattccgtgct
ttcatgagcgactgcaaggatgtattggacgaggcaaccactatgaaacttctggaaagt
tatggtcgggttgaggagttggtatattttgcaaacttgaaggagcaatatgaaattgta
gtccaccattatattcagcaaggggaagcaaagaaagcattagacgtgctacagaaatct
tcagtttcagatgagcttcagtacaaatttgcgccggagcttattatgcttgacgcgtat
gaaaccgtggaagcatggatggccaacaaaaaccttaatccaaggagattaattactgca
atgatgcgctactcaagcgaacctcatgcaaagaacgagacacatgaagtcataaaatat
cttgagttttgcgtccaccgtttgcataacgaggatccagggattcacaatttacttctc
tcattatatgccaagcaggaagatgacagtgccctgcttcgtttcctgcaatgcaaattt
gggaaaggacgagaaaacggtcccgagtttttctacgatcccaaatatgctttgcgcctg
tgtctcaaagaaaagagaacccgtgcctgtgtccatatctacagcatgatgtctatgcat
gaagaggcagtagcccttgctcttcagattgatccagaactggctatggctgaggctgat
aaggttgaagatgatgaagacttgagaaagaagctctggctgatggttgcaaagcatgtt
gtcaagcaggaaaagggagttaaaagggaaaacataaggaaagctattgcttttctcaag
gaaactgatggtcttctaaagatagaagatattttgcctttctttccggacttcgcctta
attgatgacttcaaggaagcgatttgctcatctcttgaggattacaacaagcaaatagaa
caactgaaagaggagatgaatgatgccacacgtggtgcggataacattagaaatgatatt
agtgcgctaactcaaagatatgctgtaatcgaccgtgacgaggaatgcggggtttgtaaa
cgtaaaatcttgatgatgaccggagatttcagaatggcccagggatattcttcagctgga
ccattagctcctttttatgtctttccttgtgggcactctttccatgcacagtgcctgatc
acacacgtcacaagctgtgcacacgaagagcaagccgagcatatacttgatctgcagaag
cagctgacattgcttggtagcgaaacccggagggatataaatggtagccgatctgatgaa
cccataacaaatgcaactactgcagacaagcttcggtcagagctagatgatgctattgcc
agcgaatgcccgttctgtggagaattaatgatcaacgagatcactttaccttttatcaaa
cctgaagattcactaaattctgcatcttgggacctccgaccaccgaccaacttagcaaac
cagagaaccatttctttgcctgtttga
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