Camelina sativa (false flax): 104771762
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Entry
104771762 CDS
T05044
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like isoform X1
KO
K07466
replication factor A1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03030
DNA replication
csat03420
Nucleotide excision repair
csat03430
Mismatch repair
csat03440
Homologous recombination
csat03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104771762
03420 Nucleotide excision repair
104771762
03430 Mismatch repair
104771762
03440 Homologous recombination
104771762
03460 Fanconi anemia pathway
104771762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csat03000
]
104771762
03032 DNA replication proteins [BR:
csat03032
]
104771762
03400 DNA repair and recombination proteins [BR:
csat03400
]
104771762
Transcription factors [BR:
csat03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104771762
DNA replication proteins [BR:
csat03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104771762
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104771762
MMR (mismatch excision repair)
104771762
DSBR (double strand breaks repair)
HR (homologous recombination)
104771762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
DUF223
tRNA_anti-codon
RADX
BRCA-2_OB1
zf-CCHC
CDC24_OB3
DUF5123
RHH_9
Motif
Other DBs
NCBI-GeneID:
104771762
NCBI-ProteinID:
XP_010494641
UniProt:
A0ABM0Y2Y2
LinkDB
All DBs
Position
20:26806213..26812125
Genome browser
AA seq
1033 aa
AA seq
DB search
MFHKQSHLYKSNDMAATFAFLKDVRPFKTAWKVQVKVIHSWRQNTENTVETLELVLSDSM
VRLNTNASFVLHSYVYEIQYFTITNPSFVLFQSKQIHAPVLNLSKVIDESNQTDSHSEFG
TSSCSSGINAEIEFNLGRGRAKNTMAVNLTAEAIAKMLNGEVASENDMTPVLQVTELKMI
QSKLNQNHESSNRYKITLSDGILSQQGMLNASLNSLVVQGSIQLGSILKLTRFVCNRVQT
RRIVVVADVEILVEKCDIIGTCVQSGSPNEPGRSSVFDQQRSGMGSVITQQSNGCGFEQQ
QAKRTDLNGGRYGASAYSPQPQVVHNSPDAVRYSVSANLPQPQVVHNSSEVGRYGLPANS
PQPQVAHNSSDAGRYGGANLAQPQVGYNSSDAGRYGVPASSPQRQVGQRYGTGSGYSETS
PSTRPYGSSNAGYGGSRLEQPRAPPATTAYSRPVQSSYQPQPPPMYVNRGPVARNEAPPR
ITPISALNPYQGRWTIKVRVTCKGVLRRFSNTRGEGKLFSFDLLDSGGGEIRVTCFNDVV
DQFFDQIVVGNVYLISRGSLKPAQKNFNHLHNDYEIHLDSASTIQQCYEDDPTIPRHQFH
FRNVGDIENMESNSITDLIGIVSSISPSVSIMRKNQTEVLKRSLQLKDMSGRSVEFTMWG
DFCNAEGQKLQMLCDSGASPVLAVKAGRISEFNGKQVSTIGSSQLFIEPDFPEARELREW
YDREGRNAHFTSISREFTGAGRQEVRKVITQIKDDKLGTSEKPDWITVCATISFMKVENF
CYTACPNMNGDRPCSKKVTNNGDGTWRCEKCDKSVEECDYRYILQIQLQDHTGLTWATAF
QEAGEEIIGISAKDLYYIKYEHQEEEKFEDIIRSVTFSKYIFKLKIKEETYSDEQRVKAT
VVKAEKINYSSDTRFMLEAMDKLRTGDANSLPVKLESSNYRSDALNSGIGTSGTRDTASV
DARREFGLPAANQVGQYGNQYAGPISGITSCNACGSNGHVSANCPSLMSEPQGQYTQGRY
TGGGTPRQHVGGY
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgttccataaacaatcacatctatacaaatcaaacgatatggctgctacttttgctttt
ttgaaagatgttcgacccttcaaaaccgcatggaaggttcaagttaaggtcatacattca
tggcgtcaaaacaccgaaaacactgttgaaacgctagagttggttttgtcagattcaatg
gtaagattaaatactaatgcatcttttgtccttcattcttatgtttacgagatacaatac
tttactattactaatccatcttttgtattgtttcagagtaaacagattcatgctccagtg
ctgaatctttcaaaagtgatagacgagtccaaccaaacagacagtcactctgaattcgga
acatcttcctgctccagtggaattaatgcggaaatcgagtttaatttgggtcgggggagg
gcaaaaaacacgatggcggtgaatctgacggcggaagcgatagcgaagatgttgaatgga
gaagtggcaagtgagaatgatatgacgccagtgctgcaagttacagagttgaagatgatt
cagagcaagcttaatcagaatcatgaatcaagcaatcgatacaagattactttatccgat
gggatcctctcgcaacaaggcatgcttaatgcttcattgaacagtctcgttgtacaaggc
agtattcaattgggttcgattttgaaactcactcggttcgtctgtaatcgagtccagact
cgaaggatcgttgttgttgcggatgtggagattcttgttgagaaatgcgatattattgga
acttgtgtacaatctgggtcgcctaatgaacctggccgaagctcagtgtttgatcaacaa
cgttctggaatgggatctgtaatcacacaacaaagcaatggttgtggttttgagcagcaa
caagctaaaaggactgatttgaatggtgggagatatggtgcatctgcttattcacctcag
cctcaagttgttcataacagtcctgacgctgtgagatatagtgtatctgctaatttacct
cagcctcaagttgttcataatagttctgaagttgggagatatggtttaccggctaattca
cctcagcctcaagttgctcataacagttctgacgctgggagatatggtggtgctaattta
gctcagcctcaagttggttataacagttctgacgctgggagatatggtgtaccggctagt
tcacctcagcgtcaagttggtcaaagatatggtactggttctggttattcagaaacatca
ccttccactaggccatatgggagctcaaatgcaggttatggaggctctaggttagagcaa
cctcgggcacctcctgcaacaaccgcttattcccgtccagttcaatcgagttaccagcca
caaccaccaccgatgtatgttaacaggggacctgtggctaggaacgaagctcccccgagg
ataactccgatttctgctcttaatccttaccagggtcggtggaccatcaaggtcagggtc
acgtgtaagggagtgctgaggcgttttagtaatacgcgtggggaagggaaattattcagt
tttgatctccttgactctggtggtggggaaatacgggtgacttgtttcaacgatgtggtt
gatcagttctttgaccagattgtagttggtaatgtgtatctgatttcaaggggaagtttg
aaacctgctcagaagaacttcaatcatcttcacaatgattatgaaatacatttagactct
gcatcaacgatacagcaatgctatgaagatgatcctaccattccacgccatcagttccat
tttcgtaacgttggtgatattgaaaacatggagagcaacagcataactgatcttattggt
atcgtttcgtctatcagtccgtcagtatccattatgcggaaaaatcaaactgaggtactt
aaaaggtcacttcagttaaaggatatgtcaggccgaagtgtcgagtttaccatgtggggt
gatttctgcaatgcggaaggacagaagttacaaatgctttgtgattctggggcatccccg
gttcttgctgtgaaggcaggcaggatcagtgaattcaacgggaagcaagtgagcaccatt
ggatcaagtcagttgttcatagagccagatttccctgaagccagagaattaagagaatgg
tatgatagagaaggaagaaacgctcattttacctccatatcaagagagttcaccggtgct
ggcagacaagaagttcgcaaggtaattactcagatcaaggacgacaagctagggacctca
gagaagccagactggatcacagtctgtgccaccatttcattcatgaaggttgaaaatttc
tgctacacggcttgtcctaacatgaatggagatcgtccgtgtagcaaaaaagtaacaaat
aatggagatgggacatggcgttgtgagaagtgtgacaaatctgtggaagaatgtgactac
aggtatatattgcagatccagttacaggaccatactggtctaacctgggccacagcattc
caggaagctggtgaggagataatcggaatatctgcgaaagatttgtattatatcaagtat
gaacatcaggaggaggagaaattcgaagacatcatccgcagtgttactttctccaagtac
attttcaagttgaagattaaagaagaaacttatagcgacgagcaacgggttaaagcaact
gttgtgaaagctgaaaagattaactattcttcagatactaggttcatgctagaggcaatg
gataaactcaggacaggagatgcaaattctctccctgtaaagctagagagttccaactac
aggtctgatgcattgaactccggtattggaacctcgggaactagagataccgcatcagtg
gacgcacgtagagaatttggattacctgcagcaaaccaagtgggtcaatatggaaatcag
tatgcagggcctatcagcggtattactagctgtaacgcttgtggtagcaatggtcatgtt
tctgcaaactgcccaagtcttatgagcgagccacaaggacaatacacacaaggaagatac
acaggaggtggcacgccaaggcaacatgttggcggctattga
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