Camelina sativa (false flax): 104772261
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Entry
104772261 CDS
T05044
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104772261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104772261
03009 Ribosome biogenesis [BR:
csat03009
]
104772261
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104772261
Spliceosome [BR:
csat03041
]
Complex A
U2 snRNP components
U2 related factors
104772261
Complex B
104772261
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
104772261
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
90S particles
Helicases
104772261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
ABC_tran
AAA_19
nSTAND3
SRP54
AAA_7
ATPase
PhoH
TsaE
AAA_30
T2SSE
AAA_24
AAA_16
AAA_29
FtsK_SpoIIIE
AAA_23
Motif
Other DBs
NCBI-GeneID:
104772261
NCBI-ProteinID:
XP_010495196
LinkDB
All DBs
Position
20:complement(6708843..6710870)
Genome browser
AA seq
675 aa
AA seq
DB search
MKKTYSGRYFEILEKRKNLPVWVHKEEFLKTLKENQIVLLVGETGSGKTTQIPQFVLEAV
LNENPSSGPKGKKWLVGCTQPRRVAAMSVSRRVAEEMDVEIGDEVGYTVRFEDCSSSKTV
LKYLTDGMLLREAMADPLLGRYKVIVLDEAHERTLATDLLFGLLKQTLVSRPDLKLVVMS
ATLEADKFQNYFTGVPLIKVPGRLYPVEILYTREPQRDYLEAAINTVIQIHESEPPGDVL
VFLTGEEEIEDTCRRIASKLGDQVNVMPLYSTLSPAMQQKIFDPTTDAVRKIVVSTNIAE
TSLTIDGIVYVVDPGFSKQKLYHPNTRVESLLVSPISQASADQRAGRAGRTQPGKCFRLY
TEKSFKELEKQTYAEILRSNLANTVLTLKRLGVENLLHFDLIDPPAPDTLARALDDLYHL
GALDDECNLTKTGEMMSEFPLDPQMAKMIIVSPQFNCSNEILSVSAMLSVPNCFIRPRGE
GQKAADKAKSMFSHIDGDHLTLLNVFHAFLQHNQNQDWCYENFINYRAMKSAVNVREQLV
RIMSRFQIKLCSPDFNSRDYYVNIRKALLAGYFMQVAHLERTGNYLTFRDKDDQVVHLHP
SNCLEYKPEWVVYNEYVLTSRNFIRTVTYIQGEWLVDIAPDYYKPANFPNSEAKRVLQRH
CKKRRLSEERSCKIF
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagacgtattccggaaggtatttcgaaatactggagaaacggaagaatctacca
gtgtgggttcacaaagaggagtttctcaaaactttgaaagagaatcagatagtgttattg
gttggtgagaccggaagtggtaaaacaacgcagatccctcagtttgttttagaggcggtg
ctcaatgaaaaccctagctctggtcctaaggggaagaagtggttggttggatgcacgcaa
cctcgtagagttgcagcgatgtctgtttcccgtcgtgtagccgaagagatggatgtagag
atcggggacgaagtcggttacacggtccgtttcgaggattgcagcagctccaaaacggtg
ctcaagtacctaaccgatggtatgcttctaagagaagcaatggcggatccgctcttaggg
agatacaaagtgattgttctcgatgaggcgcatgagagaactttagccacggatttgctt
tttggtcttcttaaacaaacattggttagtcgacctgatcttaagctggttgtaatgagt
gcaaccctagaagccgacaagttccagaattattttactggtgtgcctcttatcaaagtc
cctggtaggctttatccagtggagatcttgtatactcgagaaccccagagagactatctc
gaggctgctataaacactgttatccagattcacgagtctgagccacctggtgatgttctt
gttttcttaaccggggaagaagagattgaagatacttgcagaagaatcgccagtaaactt
ggtgatcaagtcaacgttatgccattgtattccactctttcgcctgctatgcaacagaag
atattcgatccgacaactgatgcagtgagaaagattgttgtctccaccaacattgcagag
acttctttaaccattgatgggattgtatacgtggttgatcctggtttctccaaacagaag
ctctaccacccaaacactcgtgtggagtccttgttggtgtctccaatatcacaggcaagt
gctgaccagagagcaggtcgtgctggtagaacacaacctggaaagtgttttaggctttac
acagaaaaaagttttaaagaattggagaagcagacgtatgctgagatattgagatcaaac
cttgcaaatacagttctgaccttgaaaagactgggtgttgaaaacttgctgcactttgat
cttatagatccccctgctcctgataccctcgctcgggccttggacgatttgtatcattta
ggagcactggacgatgaatgtaacttgacaaagacaggcgagatgatgagtgagtttcca
ttagacccacagatggcaaagatgatcatagtcagtccccaattcaactgctcaaacgag
attctttcggtttctgcgatgctttcagtacccaattgttttatcaggccaagaggagaa
ggtcaaaaagcagcagataaagctaagtctatgttttcacacattgacggagatcacctt
acgctcttgaatgtgttccatgctttcttgcaacacaaccaaaaccaagattggtgctat
gaaaacttcatcaactacagagcaatgaaatctgcagttaatgtaagagaacagctggtc
cggatcatgtcgaggtttcagattaagttgtgcagccctgatttcaacagccgggactac
tacgttaacataagaaaggccttgcttgccggttatttcatgcaagtagctcacctagaa
cgcactgggaattacttgactttcagagataaggacgaccaagtggttcacttgcatcct
tccaattgcttggagtacaaaccagagtgggtggtttacaacgagtatgttctcactagc
cgaaatttcatccgaactgttacatatattcaaggtgaatggctagtagatatcgcaccg
gattactataagcctgccaacttccccaactccgaggccaaacgagtccttcaaaggcac
tgtaagaagagaagactgtcagaagaaaggagttgtaaaatcttttga
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