Camelina sativa (false flax): 104772393
Help
Entry
104772393 CDS
T05044
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104772393
09123 Folding, sorting and degradation
03018 RNA degradation
104772393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104772393
03041 Spliceosome [BR:
csat03041
]
104772393
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104772393
mRNA cycle factors
Stress granule specific factors
104772393
Spliceosome [BR:
csat03041
]
Complex C
Other components
Complex C specific factors
104772393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Nup35_RRM_2
RRM_3
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
104772393
NCBI-ProteinID:
XP_010495317
UniProt:
A0ABM0Y4G9
LinkDB
All DBs
Position
20:10823027..10824656
Genome browser
AA seq
539 aa
AA seq
DB search
MGASSSKESATKASLLGKRNLEDDLENKPIVKRHKDETTAEANLISVKEAVEGLDDGIPI
PIPEAVAVTNKTLFVCRLPRRTKVSDIISFFSDVGDVVHVRLMVGHRYKHCGYAFVELAS
ANQVKMALENKYGEYLHGHKILLYMADFKSDSYVLPKYCKEYDARFENYIRRERHVGFHY
NEKVVVVANLSPYTNISDIKRLFKGMRVVSVRLIVNNQGKHLGYAFVEFASAHFAKKALR
KKKNDDNYLHGHKIFLMREHDETPAYVEAVAVQKKTIFVSHVSPQTEISHIINFFKDVGE
VVHVRLISDKKGRHVGFGFVEFSSDNEAEKALEKKNGEYLHDRKIVLDVFEAPNHLPKYK
YCIDYNVWYEDYLRRQESLPLEEENEAVKGVLDETPDLVEPFAVTKKTLFVSGLSCHTTL
SHIVTFFEDVGEVVRVRLIVDHRGNHVGCGFIEFASAEEAEEALEKKNGEVLRYFEISLQ
LAEIAAPYPLPPKYDLVEKLWYEDKLRGGGLDLATKPNLKKPKVAEFCGKKIIFSCDDD
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagttctagcaaagaatcggccacgaaagctagtttacttggtaagcgaaac
cttgaagatgatttggagaacaaaccgattgtgaagagacataaggatgagacaacggct
gaggctaatttaatctcagttaaagaggcagtggagggacttgatgatggcattcccatt
cccattcccgaggcagttgccgtaacaaacaagacgttatttgtttgccgcctccctcgc
agaacaaaagtatcagatatcatctctttcttcagtgatgttggagacgttgttcatgtt
cgacttatggtaggccaccggtacaagcattgtggctatgcctttgttgagcttgcttct
gctaaccaagtaaagatggcgctggaaaacaagtatggtgaatatttgcatggtcataag
attctactttatatggctgatttcaagtcggattcatacgttctgcccaagtattgcaaa
gaatacgatgctaggtttgaaaactacattcgacgagaacgccacgtaggatttcattac
aatgagaaagtagtcgttgtcgccaatctctctccctacactaacatatcagatatcaaa
cgtttattcaaaggtatgagagttgttagtgttcgacttattgtgaacaaccagggcaag
catttgggctatgcctttgttgagtttgcttctgctcactttgcaaagaaggctctgaga
aagaagaagaacgatgataattatttgcatggtcataagatttttttgatgagagaacat
gatgaaactcctgcttatgttgaggcagttgccgtacagaaaaagaccatctttgtctcc
catgtctctccccagactgaaatatcacatatcatcaatttcttcaaagacgttggagaa
gttgttcatgttcgacttatttcagacaaaaagggcaggcatgtgggttttggctttgtt
gagttttcttctgataacgaagctgagaaggcgctggaaaagaagaacggtgaatatttg
catgatcgcaagattgttcttgatgtgtttgaggctccaaaccatctacccaagtataag
tattgcatagattacaatgtttggtacgaagactaccttagacgacaagaaagccttcca
ttggaagaagaaaacgaggcagtgaaaggagtacttgatgaaactcccgatcttgttgag
ccatttgcggtaacaaagaagacgctctttgtttccggtctctcttgccatactacgtta
tcacatattgtcactttcttcgaagatgttggagaagttgtccgtgttcgacttattgta
gaccacagggggaatcatgtgggctgtgggtttattgagtttgcttctgctgaggaagca
gaggaggctcttgaaaagaagaatggtgaagttctgcgctactttgagatttctcttcaa
ttggcagagatagcagctccataccctctcccacccaagtacgaccttgtagagaagctt
tggtatgaagacaaacttcgaggaggaggccttgatttggcgaccaaacctaacctgaag
aaaccgaaggtagctgagttctgcggtaagaagattatcttctcttgtgacgacgactga
DBGET
integrated database retrieval system
