Camelina sativa (false flax): 104775761
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Entry
104775761 CDS
T05044
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104775761
03015 mRNA surveillance pathway
104775761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104775761
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104775761
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_ACIN1
Motif
Other DBs
NCBI-GeneID:
104775761
NCBI-ProteinID:
XP_010497979
UniProt:
A0ABM0YA40
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All DBs
Position
3:complement(7466086..7469514)
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AA seq
415 aa
AA seq
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MAKPSRGRRSPSLSGSSSRSSSRSRSRSGSSPSRSLSRSRSRSRSLSSSSSPSRSVSSGS
RSPPRRGKSPAGPARRGRSPPPQSKGASSPSKKAAPTQESLVLHIGSLSRNVNEGHLKEI
FGNFGEVIHVELAIDRAVNLPRGHAYVEFKARADAEKAQLFMDGGQIDGNVVKASFTLPP
RRKVSPPPKPVSSAPKRDASKSDNAGAEIEKDGPRRPRDTSPQRKTVLSPKRRSPPLRRG
GSPRRLPDSPPRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRGSPRRIR
GSPVRRRSPLPLRRRSPARRVRSPLRRSPIRRRSRSPIRRPGHSRSRSISPRRGRGPAGR
RGRSSSYSSSPSPRRIPRKVSRSRSPRRPLRGKRSSSNSSSSSSPPPPPPPPRKT
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccaagtcgtggccgtcgttccccttccttgtctggctcttcttctcgttcc
agctccagatcccgttcccgctctggttctagtccctctaggtctctttcgcgctcccgc
tcccgttctagatcgctctcttcatcttcatctccttcccggagcgtcagttctgggagt
cgcagtcctccacgccgtggaaaaagtcctgctggacctgctaggcgaggtcgctctcct
cctccacaatctaaaggagcctcttcaccttctaagaaagctgctcctactcaagaatct
cttgttctccatattggttctcttagtagaaatgtgaacgaaggccatctgaaagaaatt
tttggcaactttggtgaagttatacatgtggaacttgcgatagatcgagctgttaatctt
ccgagaggacatgcctatgttgagttcaaggcaagagctgatgctgagaaagcgcagctg
ttcatggatggtggccaaattgatggaaatgttgttaaagcaagtttcacactaccacct
cgtcggaaagtatctccaccccctaaacctgtctcaagtgcaccaaagagagatgcatca
aaatctgataatgcgggtgctgaaattgagaaagatggtcccaggcgcccaagagataca
tctccgcaacggaaaacagtactttctccaaagaggagatcacctccacttaggagaggc
ggatcacctaggcgattgcctgattctccccctcgccggaggcctggatctcctatccgc
cgtcgtggtgatacaccacctagacgcaggccagcatcgccatctagaggccgttctcca
tcttctccccctccaagacgatatagatctcctccaaggggttcccctagaagaattcgt
ggcagtcctgttcgaagacggtctcctcttcctctaaggagaaggtcacctgcaaggaga
gtacgcagtcctctcagaagatccccaatccgcaggcgtagccgatccccaattcgtaga
cctggtcactctcgttcaaggtccatctcaccccgcaggggacgaggtccagctgggaga
cgagggaggtcatcttcttactccagttcaccaagtcccaggaggattcctaggaaggtt
tcaagaagccgcagccctagaaggccactgagaggaaaaagaagcagcagtaacagcagc
agcagcagttcaccgccgccacctccacctccacctcgcaaaacttaa
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