Camelina sativa (false flax): 104776027
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Entry
104776027 CDS
T05044
Name
(RefSeq) pre-mRNA-splicing factor prp12-like
KO
K12830
splicing factor 3B subunit 3
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104776027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104776027
03041 Spliceosome [BR:
csat03041
]
104776027
03036 Chromosome and associated proteins [BR:
csat03036
]
104776027
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
104776027
Spliceosome [BR:
csat03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104776027
Complex B
104776027
Complex C
U2 SnRNP specific factors
104776027
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
104776027
TFTC complex
104776027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
104776027
NCBI-ProteinID:
XP_010498325
LinkDB
All DBs
Position
1:4872118..4879385
Genome browser
AA seq
1371 aa
AA seq
DB search
MMAAPEDESSAQSQSSSATAAPTPPPSSSPSSAGDHYLAKCILRPSVVLQVAYGYFRSRS
SRDIVFGKETCIELVIIGEDGIVESVCEQNVFGTIKDLAVIPQSNKLYSNSFQMGKDLLA
VLSDSGKLSFLSFSNEMHRFSPIQHVQLSSPGNSRIQLGRMLTIDSSGLFLAVSAYHDRF
DLFSLSTSSMGDIIHKRISYPSEDGGNGSSVQAISGTIWSMCFISKDFHESKEYGPVLAI
VTNRKGSLMNELVLFKWNVKEESMSIISEYVEPGALAHSIVEVPHSCGFAFLFRVGDALL
MDLRDPQNPCCLFRTSLDLVPASLVEEHFVEESCRVQDGDDEGLFNVAACALLELRDYDP
MFIDSESDIGKLSSKHVSSWTWEPENNHNPRMIICLDDGEFFMFELIYEDDGVKVNLSEC
LYKGLPCKEILWVEGGFLATFAEMADGTVFKLGTEKLHWMSSIQNIAPILDFSVMDDQNE
KRDQIFACCGVTPEGSLRIIRSGINVEKLLKTAPVYQGITGTWTVKMKLTDVYHSFLVLS
FVEETRVLSVGLSFKDVTDAVGFQSDVCTLACGLVADGLLVQIHQGAIRLCMPTTDAHSD
GIPVSLPFFSSWFPENVSISLGAVGQNLIVVSTSNPCFLSILGIKSPSSQCCEIYEIQRV
TLQYEVSCISVPQKHIGKKRSRASSWDNSCKAAIPSGMEQGYTFVIGTHKPSVEVLSFSE
DGVGVRVLASGLVSLTNTMGTVISGCIPQDVRLVLVDQLYVLSGLRNGMLLRFEWPPFSH
SSGFNCPDYFSYSKEEMDIVVGKKDNLPINLLLIATRRIGITPVFLVPFSDSLDSDIIAL
SDRPWLLQTARQSLSYTSISFQPSTHATPVCSSECPQGILFVSENCLHLVEMVHSKRLNA
QKFHLGGTPRKVIYHSESKLLIVMRTDLYDTCTSDICCVDPLSGSILSSYKLKPGEAGKS
MELVRVGNEHVLVVGTSLSSGPAILPSGEAESTKGRLIILCLEHTQNSDSGSMTICSKAG
SSSQRTSPFRDVVGYPTEQLSNSSLCSSPDDNSYDGIKLDEAETWQLRLASATTWPGMVL
AICPYLDHYFLASAGNAFYVCGFPNDSPERMKRFAVGRTRFMITSLRTYFTRIVVGDCRD
GVLFFSYHEDSKKLHQIYCDPAQRLVADCFLMDANSVAVSDRKGSIAILSCKDHADFEYS
SPESNLNLNCAYYMGEIAMAIKKGCNIYKLPADDGLQSFGLSKSIGTADDTIIAGTLLGS
IFVFAPITSEEYELLEAVQAKLGIHPLTAPVLGNDHKEFRGRENPYQATKILDGDMLAQF
LELTNRQQESVLSTPPPSPSTSKASSKQRSSPPLMLHQVVQLLERVHYALH
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggctccggaggatgaatcttccgctcagtctcaatcatcttctgccacggcg
gctcctacgcctcctccttcctcttccccttcttccgccggggatcattacctcgctaag
tgtatcctccgtcccagcgtcgttctccaggttgcttatggatacttccgctcccgttcc
tcccgcgacatagttttcggcaaggagacatgcatagaattggtgattattggtgaagat
gggattgttgaatcggtgtgtgaacagaatgtctttggaacaattaaggatttggctgtc
ataccccagagtaacaaactatattcaaatagttttcagatgggaaaagaccttctcgct
gttctttctgattctggaaagctctcatttctctcatttagcaatgaaatgcacaggttc
tcgcccatacaacatgttcaactttcaagtccaggtaactcaaggattcaacttggaaga
atgctcacaatagattccagtggtctctttcttgctgtcagtgcgtatcatgatcgtttt
gatctgttttccctctcaacatcgtctatgggtgatattattcataagaggatttcttat
ccttctgaagacggagggaatggtagttctgtacaagcaatatctggtactatttggagc
atgtgtttcatttctaaagattttcatgaatccaaggagtatggtcctgttcttgccatt
gttacaaataggaaagggtctctcatgaatgagctggttttgtttaaatggaatgtcaaa
gaggaatccatgtctataatatcagagtatgttgaacctggggctctggcacatagcatt
gtcgaagtacctcactcctgtggatttgcctttctcttcagggttggtgatgcgctctta
atggatcttagagatcctcaaaacccttgctgtctgtttaggacatccttagatcttgtt
cccgcttcattagtggaagagcattttgttgaagagtcgtgtcgagtacaagatggtgac
gatgagggtctttttaatgttgctgcatgtgctttgttagagctcagggattatgatccc
atgttcatagattctgaaagtgacattgggaagttgagttctaagcatgtctcttcatgg
acttgggagccggaaaataatcataaccctcggatgattatttgcttagatgatggtgaa
tttttcatgtttgaactcatatatgaggatgatggagttaaagtaaatctgtcagaatgt
ttatacaaaggtttaccatgcaaggaaattctatgggtcgaaggtgggttcttggctacg
tttgcggaaatggcagatggaacggttttcaaattgggaactgaaaagctacattggatg
agttccatacaaaatattgctccgatcttggatttttcggttatggatgaccagaatgag
aaacgagaccaaatatttgcttgctgtggtgtaacccctgaaggctctttgagaattatt
cgtagtggcattaatgtagaaaaacttctgaaaaccgcgcccgtttatcaaggaataact
ggtacttggactgttaaaatgaaacttactgatgtataccattcatttcttgttttgtca
tttgttgaagagaccagggttttatcagttggattaagtttcaaagatgtcactgatgca
gttggtttccagtctgatgtttgtaccttggcatgtgggcttgttgctgatggtttgttg
gttcagattcaccaaggtgcaataaggctgtgcatgcccaccacggatgcgcattctgat
ggtattcctgtctctttaccatttttctcgtcgtggtttcccgaaaatgtcagtatcagc
ttgggtgcagttggtcaaaatttgatagttgtctctacatctaacccttgtttcttgtct
attcttgggatcaaatcaccatcatctcagtgctgtgaaatctacgaaattcagcgagta
acattgcagtatgaagtttcctgcatctcagttcctcaaaaacatattggaaagaagaga
tcccgtgcttcttcctgggataatagttgcaaagctgcgattccttctggtatggagcaa
ggctatacgtttgtgattggcacacataagccttctgttgaggtcctctccttctcagaa
gatggtgttggtgtacgagtccttgcttctgggttggtatcgctaacaaatacaatggga
actgttattagtggatgcattcctcaagatgtaagactcgtgttagttgatcaactttat
gtcctttctgggttgagaaatgggatgctgctccgttttgaatggcctcctttttcacat
tcatccgggtttaattgtccagattattttagttactccaaagaagagatggacattgtt
gtggggaaaaaagacaatttacccatcaaccttctgttaattgccacccgacgcattggc
atcacacctgttttcttggttccattcagtgattcactggattcagacataatagctctt
agtgacaggccatggttgttacaaacagctcgacaaagcctttcatatacttccatctca
ttccaaccttctactcatgcaactcctgtatgttcgtctgaatgccctcaaggaattctt
tttgtttcagagaactgtttacatctggtggagatggtgcacagcaagcggcttaatgcg
caaaagtttcaccttggaggcaccccgcgaaaggttatctaccatagtgaaagcaaacta
ttgattgtgatgagaacagatctgtatgatacgtgtacgtctgatatatgctgtgtggac
ccgctcagtgggtcaatcttatcatcttacaagctcaaacctggagaagctggaaagtca
atggagcttgtacgtgtgggaaatgagcatgtccttgtggttgggacgagtttgtcttct
ggtcctgctatactacccagtggtgaagccgaaagtacaaaaggacgattaatcattctc
tgcttagaacacactcaaaactcggatagtggctcaatgacaatttgttcaaaggctggt
tcgtcttcccaacgtacatcaccttttcgtgatgttgtgggatacccaacagaacaatta
tcaaacagtagtctttgtagcagtccagatgataacagctatgatggaatcaaacttgat
gaagctgaaacttggcagttaagattggcctctgcaaccacttggccgggcatggtactt
gcaatctgtccataccttgatcattacttcctggcatctgctggcaatgctttctatgta
tgtggttttccgaacgatagtcctgagagaatgaagaggtttgcggttggaaggactcgt
tttatgataacatctctgcgcacatacttcactagaattgtcgttggtgattgccgtgat
ggtgttctatttttttcttatcacgaggactcgaagaaacttcaccaaatatattgtgat
ccagcgcagaggttagttgctgactgctttctaatggatgccaattctgttgctgtatct
gatcgcaagggaagtatagcaatcttgtcttgcaaagatcatgcagactttgaatattca
agtccggagtccaacctgaatctaaactgtgcttattacatgggcgagattgccatggct
atcaaaaagggttgcaacatctataaacttccagctgatgatggactgcagagttttggt
cttagtaaaagtattggcacagctgatgacactatcatagcaggcacgctattgggaagt
atatttgtatttgctcctattacaagtgaggaatatgagctcttagaagctgtccaagcg
aagctcgggatccacccgcttactgctcctgttcttggtaatgatcataaggagttccga
ggtcgagagaatccgtaccaagcaacaaagatattggatggtgacatgcttgctcagttc
ttggagcttacaaatagacagcaagagtcagttttatcgacacctccgccatcaccaagt
acatcaaaagcaagttcaaaacaacgttcttctccgcctctcatgctacaccaagttgta
cagttgcttgagcgtgtccattacgctttacactag
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integrated database retrieval system
