Camelina sativa (false flax): 104776220
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Entry
104776220 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104776220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104776220
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104776220
Spliceosome [BR:
csat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104776220
Complex C
U5 SnRNP specific factors
104776220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
DUF1493
AAA_11
Nis1
Motif
Other DBs
NCBI-GeneID:
104776220
NCBI-ProteinID:
XP_010498549
LinkDB
All DBs
Position
3:complement(9520196..9528861)
Genome browser
AA seq
2170 aa
AA seq
DB search
MANLGGGAEAHARFKQYEYRANSSLVLTTDNRPRDTHEPTGEPETLYGRIDPRTFGDRVA
RGRPQELEDKLKKSKKKERDVVDDTANVRQSKRRRLREESVLTDTDDAVYQPKTKETRAA
YEAMLSLIQQQLGGQPLNIVSGAADEILAVLKNETFKNPEKKMEIEKLLNKIKDNEFDQL
VSIGKLITDFQEGGDSGGGKANDDEGLDDDLGVAVEFEENEEDDEDSDPDMVQEEDDEED
EEPTRTGGMQVGAGLNDDDAGDANEGTNLNVQDIDAYWLQRKISQAYEQQIDPQQCQVLA
EELLKILAEGDDRDVENKLLVHLQFDKFSLVKFLLRNRLKVVWCTRLARAEDQEERNRIE
EEMRGLGPELTAIVEQLHATRATAKEREENLQKSINEEARRLRDETGGDGGRGRRDVADR
DLESGWVKGQRQMLDLESLAFDQGGLLMANKKCDLPPGSYRSHGKGYDEVHVPWVSKKVD
INEKLVKITEMPGWAQPAFKGMKQLNRVQSKVYETALFTAENILLCAPTGAGKTNVAMLT
ILQQLEMNRNEDGTYNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVTVRELSGDQSLT
GKEIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIVARTL
RQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIGISVKK
PLQRFQLMNDLCYQKVVAGAGKHQVLIFVHSRKETAKTARAIRDTAVANDTVSRFLKEDS
VSREVLQSQVEIVKNNELKDILPYGFAIHHAGLTRSDREIVEDLFAQGHVQVLVSTATLA
WGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITGYSEL
QYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRNPTLY
GLAPDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHG
TIATYNEHLKPTMGDIDLYRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKETLEEPS
AKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKALNLSK
MVGKRMWSVQTPLRQFHGIPNDILMKLEKKDLVWERYYDLSAQELGELIRSPKMGRPLHR
FIHQFPKLTLSAHVQPITRTVLKVELTVTPDFLWDEKIHKYVEPFWIIVEDNDGEKILHH
EYFILKKQYVDEDHTLSFTVPIFEPLPPQYFVRVVSDKWLGSQTVLPVSFRHLILPEKYP
PPTELLDLQPLPVTALRNPNYERLYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPTGSGKT
ICAEFAILRNHQEGPATMRVVYIAPLEAIAKEQFRIWEKKFGKGLGLRVVELTGETALDL
KLLEKGQIIVSTPEKWDALSRRWKQRKFVQQVSLFIVDELHLIGGLGGPVLEVIVSRMRY
ISSQVNNKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGVDISSFE
ARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPDFLLGNL
EELDPFVSQIREETLKETLRHGIGYLHEGLSSLDQEIVTQLFEAGRIQACVMSSSLCWGT
PLSAHLVVVMGTQYYDGRENSHSDYPVHDLLQMMGRASRPLLDNAGKCVIFCHAPQKEYY
KKFLYEAFPVESNLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNLQ
GVSHRHLSDHLSELVENTLSNLEASKCIEIEDEMELSPLNLGMIASYYYISYTTIERFSS
LLSSKTKMKGLLEILTSASEYDMIPIRPGEEETVRRLINHQRFSFENPKCTDPHVKANAL
LQAHFSRQNIGGNLAMDQRDVLLSATRLLQAMVDVISSNGWLNLALLAMEVSQMVTQGMW
ERDSMLLQLPYFTKDLAKRCQENPGRNIETVFDLVEMEDEERQELLNMSDVQLLDIARFC
NRFPNIDLTYEVVDSEEVTPGKEVTLQVMVERDMEGRTEVGAVDSLRYPKTKEEGWWLVV
GDTKTNQLLAIKRVSLQRKAKVKLDFTVPTEPGEKSYTLYFMCDSYLGCDQEYSFSVDVK
GAGAGDHMEE
NT seq
6513 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacttgggaggcggtgcggaagcacatgccaggttcaagcagtacgagtacaga
gccaactctagtctggtgttaaccactgataatcgtcctcgggatacacatgagcctaca
ggagaaccggaaactctgtatgggagaattgatccgaggacttttggtgaccgtgttgct
aggggaaggcctcaggagctggaggataagcttaagaagtctaagaagaaggaacgcgat
gttgtagatgatactgctaatgttcggcagagtaagaggcgtcgtcttagggaagagagc
gtgcttactgatactgatgatgcggtttatcagcccaagactaaggagacgagggctgcg
tatgaggccatgcttagtcttattcagcagcagttgggtgggcaacctcttaatattgtt
agtggtgctgcggatgagattttggccgtcctcaagaacgaaacattcaaaaaccctgag
aaaaagatggagatcgagaagttgctcaacaaaattaaagacaatgagtttgatcagctt
gttagcattggaaagttgatcactgattttcaagagggtggtgattctggtggtggtaaa
gcgaatgacgatgaggggcttgatgatgatttgggcgtcgctgttgaatttgaggagaat
gaagaagatgatgaggatagtgatcctgatatggttcaagaggaagatgatgaggaggat
gaagagcctaccagaactggaggtatgcaggttggtgcaggattaaatgacgatgatgca
ggagatgcaaatgagggcacaaatcttaatgttcaagacatagatgcatattggctccag
agaaagatatctcaagcatatgaacagcagattgatccacaacaatgccaagtactcgca
gaagagcttcttaagatactcgctgaaggagatgatagggatgttgagaacaagctgctt
gtgcaccttcagtttgacaagtttagccttgttaaatttctgctgcggaaccgtcttaaa
gttgtgtggtgcactcggttggctagggcagaagaccaggaagagaggaatcgaattgag
gaggagatgagggggttgggcccagagttgacagcaattgtggagcagctgcatgcaaca
agagcaacagcgaaagagagggaggagaatctgcaaaaaagtattaacgaagaagctcga
cgtttgagggatgaaactggtggagatggaggcagaggcaggagagatgttgctgataga
gatttagagagtggctgggtgaagggtcagcgtcagatgctggacttggagagtttggct
tttgaccaaggtggtctcctgatggcgaataagaagtgtgaccttcctcctggctcttac
agaagtcatggcaaaggatatgatgaagtccatgtgccatgggtttctaaaaaggtggat
atcaatgagaagcttgtgaagattaccgaaatgcctggctgggcccaacctgctttcaag
ggaatgaaacagttgaacagggttcaaagcaaagtgtatgagactgcactttttacggca
gagaacattcttctttgtgctccgactggtgcggggaagaccaatgttgctatgcttacg
atacttcagcaacttgaaatgaataggaatgaagatggaacttataaccatggagattac
aaaattgtctatgttgcacccatgaaagcccttgttgctgaagttgtaggtaatttgtct
aatcgtctgaaggattatggagttactgtgagagaactcagtggggatcagtccctaacc
gggaaagaaattgaagagactcagataattgttacaacaccagagaagtgggatatcatc
actaggaagtctggagatcgaacttatactcagcttgtgagacttcttataatcgatgaa
attcatctccttcatgataatcgaggtcctgtgcttgaaagcattgttgctaggactctt
aggcaaattgaaaccacgaaagagaatattcgtctggtgggtttatctgctacactgcca
aattatgaagacgtggccttatttttgcgggttgatctgaagaaaggtttgtttaaattt
gaccgcagctacagacccgtgcctctccatcagcagtatattggaatcagtgtgaagaaa
ccgttgcagcggttccaactgatgaatgatctatgttatcagaaagtagtggctggtgct
ggaaagcaccaggtccttatttttgttcattcgaggaaggaaacagcaaaaactgcaaga
gcaatacgggacacggcagtggcgaacgataccgtcagcagattcttgaaagaagatagt
gtaagtcgtgaagttcttcagagtcaggttgagattgttaagaataatgagctgaaagat
attctgccatacggttttgcaattcatcacgctgggttaacaaggagtgatcgtgagatt
gttgaagatctttttgctcaggggcatgtgcaagtcctggtttccacagcaactctcgca
tggggtgtgaatttgcctgcacatacagttattataaaaggaacccaagtgtataatcct
gagaaaggggcgtggatggagctgagtcctctagatgttatgcagatgcttggccgtgct
ggaagacctcagtatgatcaacatggggagggtataattatcaccggctacagcgagctg
caatattatctttctttgatgaatgagcaactacctattgagagccagtttatttctaaa
cttgctgatcagcttaatgctgaaattgtgcttggaaccgttcaaaatgctagagaggct
tgccattggcttggttatacgtatttatatatccgtatggttcgtaatccaacgctgtat
ggcttagcgcctgatgcccttgcaaaagacgtagtgttggaggaaagaagagctgacctg
atacattcggctgctactatcttggacaaaaacaacttggttaagtatgacaggaaaagt
gggtacttccaagttacagatttgggacgcattgctagctactattacataacccatggg
acaatagctacgtacaatgagcatttgaagccaacaatgggtgatatagatctctatcgt
ctgttctcactgagtgaggagttcaagtatgttactgttcggcaagatgagaagatggaa
ctggcgaaacttttggatcgtgtccctattccgatcaaggaaactttggaggagcccagt
gcaaagataaatgtattgctgcaggcatatatttcacagctaaagcttgagggtctttct
ttgacatctgacatggtctacattactcagagtgctggacgtcttgtgcgagctctctac
gaaattgtattgaagaggggatgggctcaactggcagagaaggctctgaacttgtctaaa
atggttgggaagaggatgtggagtgtccagacaccccttcgtcagtttcatggaattcct
aatgatattttgatgaagttggagaagaaggatttggtgtgggagagatactatgatcta
tccgcacaggagctaggagagcttattcgtagtcctaagatgggcaggccgcttcacagg
ttcatccaccagttcccaaaactgactctttctgcacatgttcagcctataactcgcact
gttctgaaggtggagctcacagttacacctgatttcttgtgggacgagaaaattcataaa
tatgttgagccgttctggataattgtggaagacaatgatggtgaaaagatccttcatcac
gagtattttattttgaagaagcagtatgttgatgaggatcacactttgagcttcactgtg
ccaatctttgaaccactaccacctcagtattttgtccgagtggtttcagacaagtggctt
ggctcgcagactgtgttgcctgtatctttcaggcatcttattcttccagaaaagtatcca
cctccgacggaactactggacttgcagcccctcccagtgacggcgctaaggaatccaaat
tatgagagactctatcaggatttcaagcattttaatccagtgcagacccaggtctttact
gttttgtataacacaaacgacaatgtgttggttgctgctccaacgggaagtggtaaaact
atttgtgcggagtttgctattttaaggaatcatcaagaagggcctgctacaatgcgtgtt
gtttatattgcgccgcttgaggctattgccaaggagcagtttcgtatctgggagaagaag
tttgggaagggtcttggtttacgggttgttgagctaactggggagactgcattggatctt
aagctgcttgagaaaggtcagataatcgtaagtactcctgagaaatgggatgctctttcc
cgcaggtggaaacagagaaaattcgttcaacaggttagccttttcatcgtcgatgaactc
catctaattggaggtctaggtggtccagtgttggaggtaatcgtctccagaatgagatat
atttcaagtcaggtcaataacaagatcaggattgttgcgttatccacttcccttgcaaat
gcgaaggatcttggggagtggattggggccagttcccacggccttttcaacttccctccc
ggagtccgtcctgtccctctggagattcacattcagggagtggatatatctagttttgaa
gccaggatgcaggcgatgaccaagccaacctacactgccatagtccagcacgccaagaac
aagaagccggctattgttttcgtcccaacccgtaaacatgtccgcttgactgctgtggat
ctgatggcttattctcacatggataacccgcagagtcctgactttctgttagggaatctg
gaagaactggacccttttgttagccaaatccgcgaggaaacactgaaggagacactgcgc
catggtattgggtacttgcatgagggtttaagcagtctggatcaggagattgtgacacag
ctctttgaagctggacggatacaggcttgtgtgatgagcagttcattgtgttggggcact
ccattatctgcgcatttggtggtcgtaatggggacacagtattacgatgggagggaaaat
tcacattctgattatcccgtccatgatctgcttcagatgatggggcgtgctagccgacct
cttcttgacaatgccgggaagtgtgtgatcttttgtcacgcaccgcagaaggagtattac
aagaaatttttgtatgaagccttccctgtggaaagtaatctccagcatttcttgcatgat
aatttcaacgcagaagtggttgctggggttatagaaaacaagcaagatgccgtggattat
cttacatggactttcatgtacaggaggcttccccagaacccgaactactacaatctccaa
ggtgttagccacaggcatttgtctgatcacctatcagagctggttgagaacaccttgtct
aatcttgaagccagtaaatgcattgagatagaggatgagatggaactctctcctcttaac
cttggtatgattgcatcctattattacatcagttataccaccattgagcgcttcagttct
ctgttgtcttctaaaaccaagatgaagggccttcttgagatcttgacctcagcttcggag
tatgacatgatccctatacggcctggcgaagaggagactgttcggagactaatcaatcac
cagaggttctcttttgaaaacccaaaatgcacagaccctcatgtgaaggcaaacgcgctt
ctccaggcgcatttctcaaggcaaaacattggcgggaacttggcaatggatcagcgtgat
gtccttttatctgcaactagacttcttcaagctatggttgatgtgatatcaagcaatggc
tggctgaatcttgctctgttagctatggaagtaagccagatggtgactcaaggcatgtgg
gagcgggactccatgcttctgcagctcccctactttacaaaggacttggccaagaggtgc
caggagaacccggggagaaacattgaaaccgtatttgatcttgtggagatggaggacgaa
gaacgccaagagcttctcaatatgtcagacgtgcagcttctagacattgccagattctgc
aaccgcttcccaaacatcgaccttacttacgaggttgttgacagtgaagaggtgacccca
gggaaagaggttacattgcaagtgatggttgagagagacatggaggggaggacagaagtg
ggagctgtggattcactcaggtatcccaagaccaaagaagaaggatggtggctggtcgtg
ggagacaccaagacgaatcagttgctggcaatcaagcgtgtctcattgcaacggaaagcg
aaggtgaagctggatttcacggtaccgacagaaccaggagagaagtcatacacactatac
ttcatgtgcgactcttacttgggctgtgaccaagagtactctttctctgttgatgtcaaa
ggagctggcgctggagatcacatggaagaatga
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integrated database retrieval system
