Camelina sativa (false flax): 104776647
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Entry
104776647 CDS
T05044
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104776647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104776647
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104776647
Spliceosome [BR:
csat03041
]
Complex C
Other components
Step II factors
104776647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
HA2_N
AAA_30
nSTAND3
ResIII
PhoH
AAA_16
DUF2532
SLFN-g3_helicase
ATPase
ABC_tran
T2SSE
CAP
TsaE
Motif
Other DBs
NCBI-GeneID:
104776647
NCBI-ProteinID:
XP_010499046
LinkDB
All DBs
Position
3:11812148..11816267
Genome browser
AA seq
708 aa
AA seq
DB search
MPSMAQGEPRSSVQNSKPNFSMRQKITEHRKSLPIASVEKRLIEEVRKNDILIIVGETGS
GKTTQLPQFLYNAGFCREGKMIGITQPRRIAAVTVAKRVAEECEVQLGQKVGYSIRFDDT
TSNVTRLKYMTDGLLLREALLDPHLSRYSVIIVDEAHDRSVHTDVLLALLKKIQRARLKP
IGEKTEIGHMALEMQTKTRDENGPQQNGVLRGCQGRKLSPLKLIIMSASLDARVFSEYYG
GAKAVHVQGRQFPVDILYTVHPESDYIDAALVTIFQIHMEEKPGDILVFLTGQDEIESVE
RLVQERLQHLPEEKRKLLPIPIFSALPSEQQMKAFAAAPPGFRKVILATNIAETSITIPG
IRYVIDPGFVKARTYDPRKGMESLDVVPASKAQTLQRSGRAGREVPGKCFRLYPEREFEK
LEDSTKPEIKRCNLSNIILQLKALGIEDIIGFDFIDKPSSGAIVKALAELHSLGALTDDG
KLEDPAGYQMSRLPLEPIYSKALILANQFNCLEEMLITVAVLTVESIFYDPREKREEART
ARNHFASVEGDHLTYLSVYRESDEFLEKKNVAGSGNNIDKIMKKWCKENFVNSRSLKHAR
DIYRQIREHVVQMGFNVSSCGSDMLEFRRCLAASFFLKAAQRQLDGTYRALESGEIVHIH
PTSVLFRAKPECVIFDELMQTSKKYIKNVTRIDPLWLAELAPHHYKTE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaatggcgcaaggagaacctcggagctctgtacaaaacagcaaaccgaacttc
agcatgaggcaaaagataacagaacatagaaagtctcttcctattgcttcagtggagaaa
cgtttgattgaggaggttcgaaagaatgatattttgattattgttggtgaaaccggtagt
gggaaaactactcaattgcctcagttcctatacaatgctggattctgtcgagagggaaag
atgatagggataacacaaccaaggcgtattgctgctgtgactgttgctaaaagggtagct
gaggaatgtgaggttcagttaggccaaaaggttggctattccattaggtttgatgatact
acttctaatgtgactaggttgaaatacatgacagatggattgttgctgagggaagcgctg
ttggatcctcatctttctagatattcagttattattgtcgatgaagctcatgacaggagt
gttcatactgatgttctgctggccttgctgaaaaaaatacagcgggctcggttgaagcct
attggtgagaaaactgagattggtcatatggcattagaaatgcagacaaaaacaagggat
gagaatggtcctcagcagaatggtgtattaagagggtgtcaaggtagaaaattatctccg
ttgaagctgatcatcatgtctgctagtttggatgctcgtgttttctctgagtattacggt
ggtgccaaagctgttcatgtgcaagggcgacaatttcctgttgacattctttacactgtt
catcctgaatcagattatatagatgctgccttggtcaccatatttcagattcatatggag
gagaagccaggtgacatacttgttttcctcactgggcaagatgaaatcgaatctgttgag
agactagtccaagaaagacttcagcatttacctgaagagaaacgaaagctactgccaatt
cccatcttttctgcacttccatcagagcagcaaatgaaagcttttgccgcagctccgcct
ggttttcgtaaggtgattttggccacgaatatagcagagacatcaattacaattcctgga
ataagatacgttatagaccctggttttgttaaggcacgaacctatgatccaaggaaaggc
atggagtcacttgatgttgttccagcatcaaaagcacagacgcttcaaagaagtggacgc
gcaggacgtgaggttcccgggaagtgctttcgtctttatccggagagggaatttgagaaa
ctggaagactcaactaaaccagagatcaagagatgcaacctctcaaatatcattttgcag
ctgaaggctctcggaattgaggacataattggatttgattttatagataaaccttcaagt
ggtgcgattgtaaaagcattggcagagttgcactcgcttggtgccttgacggatgatggt
aaactagaagatcccgctggctaccaaatgtcacggctcccactggaacctatttactcc
aaagctctaattttggccaatcaattcaactgtctagaggaaatgctgatcactgttgcc
gtgctcactgtggagtccatattttatgatccgcgtgagaagagagaagaggcaagaaca
gcaagaaaccacttcgctagcgttgaaggggaccacctaacttatcttagtgtttatcgg
gagtcagatgagttcttggaaaagaaaaatgtagccggcagtggaaacaatattgataaa
attatgaaaaaatggtgtaaggagaactttgtgaatagccgttccttgaagcatgctcgt
gacatatataggcaaattcgtgaacatgttgtacagatgggttttaatgtgtcttcatgc
ggaagtgacatgcttgagtttcgtagatgtcttgctgcatcgtttttccttaaagcagca
cagagacaattggacggtacatacagggctttggaaagtggtgagattgtccacatccac
ccaacttctgttttattccgtgcgaaacctgaatgtgttatattcgacgagctcatgcaa
accagcaagaagtacatcaagaacgtcacaagaattgatcccttatggttggctgagttg
gctcctcatcattacaaaacggagtga
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