Camelina sativa (false flax): 104777013
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Entry
104777013 CDS
T05044
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1-like isoform X2
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104777013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csat03036
]
104777013
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
104777013
SWR1 complex
104777013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
104777013
NCBI-ProteinID:
XP_010499531
UniProt:
A0ABM0YDZ9
LinkDB
All DBs
Position
1:5229657..5238204
Genome browser
AA seq
1746 aa
AA seq
DB search
MNNLTASEETEKSPSVRRSNDSCGRLAKTKTHSHDLEPGTTTASAKCRKEDHTYDFNDEQ
EDVDFVVATGEEKDDETTLSLEEELAKAENEDHVEEISLLQKESEMPIEVLLARYKEDFG
DKDISEDESEYSCAQSEESGVDSHENRQQANSDDENVDSTECKPDPKPCAEIVDGTSHEI
TEDNGKDSSDKIADAAAAARSAQPTGFTYSTTKVRTKLPFLLKHSLREYQHIGLDWLVTM
YEKRLNGILADEMGLGKTIMTIALLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPA
FKILTYFGSAKERKLKRQGWMKLNSFHVCITTYRLVIQDSKMFKRKKWKYLILDEAHLIK
NWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIA
GMVEGQEKINKEVIDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDF
IASTETQATLNSGSFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMAGIDVQLSSTICSL
LLESPFSKVDLEALGFLFTHLDFSMTSWEGDDIKAISTPSELIKQRVDLKDDPEAIPLSS
KNRKNLQGTNIFEEVRKAIFEERVKETKDRAAAIAWWNSLRCQRKPTYSTSLRTLLTIKS
PLDDIHHLKANRSSYMYSSTLADIVLSPIERFQKIIELVEAFTFAIPAARVPSPACWCSR
SDAPIFLSPSYKEKVTDLVSPLLSPIRPAIVRSQVYFPDRRLIQFDCGKLQELAMLLRKL
KFGGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTSPKIFLFI
LSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEEN
ILKKANQKRALDNLVIQNGEYNTEFFKKLDPIELFSGHKALTTKDEKETSKNCGAEVPLS
NADVEAALKQAEDEADYMALKRVEQEEAVDNQEFTEEPVERPEDDELVNEDDLKADEPVD
QGLVASGSTKEDIPLLHSDTRDERAVITTSSQEDDTDVLDDVKQMAAAAAAAGQAISSFE
NQLRPIDRYAIRFLELWDPIIGESAMENEAGFEEKEWELDHIEKYKDEMEAEIDDGEEPL
VYEKWDADFATEAYRQQVEVLAQHQLMEDLENEAREREAAEMAEMDLIQNETPHVPKSKK
KKKAKKAKFKSLKKGSLAAEPKYLKSVVKVEDSTDDDNEEFAYVSSSDSDMVTPLSRMHM
KGKKRDLIVDTEEENTSKKKAKKHKKSLPNSDIKYKQPSALHDELEPSKPPNSMVVDNEM
KLTSRGKTIGKKSITSMPIKRVLMIKPEKLKKGNLWSRDCVPLPDSWLPQEDAILCAMVH
EYGPNWSFVSGTLYGMTAGGAYRGRYRHPAYCCERYRELIQRHIMSASDSAVNEKNLNTG
SGKALLKVTEENIRTLLNVAAEQPDTEMLLQKHFSCLLSSIWRTSTRTGNEQLLSLSNPI
FNRQFIGSVNHSQDIARKPWQGMKITSLSRKLLEAALQDSSTSQPNNTASRSRLQENQSI
NKVELDLTLEFPPRGYDDSLTQFPPMISVSIDGSDSLNYVNEPPVEDVLKGYRIAAENRY
RNAANACIEDSFGWASNTFPANDLKSRTGTKAQSLGKHKLSVADSAKSSKSKQRKLLAEQ
TEVAWVRPNDPNLKFDFTPADREDEEVEEKAVLEEIEMISCSQWYDPFFTSGLDDCSLAS
EISEIE
NT seq
5241 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatcttactgcttctgaagaaacagaaaagagcccaagtgttcgtcgttctaat
gatagctgcggtcgtttggcaaaaaccaagacccattctcatgacctcgagccaggcacg
acgactgcttctgctaagtgcagaaaggaagatcatacttatgattttaacgatgaacag
gaagatgtcgactttgttgttgccactggtgaggaaaaggatgatgagacaacactttct
ctcgaagaggaattagcgaaagcagaaaatgaagaccatgtcgaagagatttctctgctg
caaaaagagagtgaaatgcctattgaagtactgctcgcaaggtataaggaggatttcggt
gacaaggatatttctgaggatgaatctgagtattcatgtgctcagtctgaagagtctggt
gtagactcacacgaaaataggcagcaagctaattcagatgatgaaaacgttgattcaaca
gaatgtaagccagatccaaagccttgcgcggaaatagttgatggcacatcccatgaaata
acagaagataatggtaaagatagtagtgataaaattgctgatgcagcagcagcagcaaga
tctgcgcagccaactggatttacgtactctacaacaaaagttcgaacgaaactgccgttt
ctgctcaagcattctctgcgtgagtaccaacacattggtttggactggcttgtcacgatg
tatgagaaaagattgaacgggattctagctgatgaaatgggtcttggaaagacaattatg
accattgctcttctagcacaccttgcatgtgataaggggatatggggtccccatctgatt
gtggttccaacaagtgtgatgcttaattgggaaactgagtttcttaagtggtgtcctgca
tttaaaatactcacctactttgggagtgcaaaggagcggaaactcaagagacaaggatgg
atgaagcttaactcatttcatgtatgcataacaacctataggctagttattcaggacagt
aaaatgttcaagcgcaagaagtggaaatacttgattcttgacgaagcccatttaattaag
aattggaagtctcagagatggcaaacactattgaacttcaattctaaacgcagaattttg
ttgactggtacaccgctgcagaatgatcttatggaattgtggtcacttatgcattttctg
atgccacatgtctttcagtctcaccaggaattcaaagattggttctgtaacccgatagca
gggatggttgagggacaagaaaaaatcaacaaagaagttattgatcgcttacataatgtc
ctccgtccttttcttctacggcgcttaaaaagggatgtggagaagcaacttccttcaaaa
catgagcatgttattttctgtagactgtctaagaggcagcgcaacttgtacgaggacttc
atagcaagcacagaaacacaggctacacttaacagtggaagcttttttgggatgataagt
atcattatgcaattgcggaaagtgtgtaatcatcctgatctctttgagggtcgtcctatt
gtaagttcctttgatatggctggcattgatgtgcagttgagttcaacaatctgttcgctg
cttttggaaagtccgttttccaaggttgatcttgaagctttgggattcttattcacacat
cttgatttttctatgacttcttgggaaggggatgatattaaagctatttcaactccctca
gaattaatcaagcagcgtgtggacttgaaggatgatccagaagcaatccctttgagttcg
aaaaaccgcaaaaatctgcaagggacgaatatttttgaagaagtacgtaaggccatcttt
gaggaaagggttaaagaaactaaggatcgggcagctgccattgcatggtggaattctttg
agatgccagagaaagccgacttactctacatctctgagaactcttttaaccattaagagt
ccactcgatgatatacaccatcttaaagctaatcgttcatcttacatgtattcctcaacc
ctcgctgacatagttctttcaccgatcgagcgctttcagaagataattgagctagttgaa
gctttcacatttgcgattccagctgcacgagtaccttcacctgcttgctggtgcagccgt
agtgacgctcctatttttcttagtccatcatacaaggagaaagttacagatttagtgtca
cctcttttgtctccgattagacctgcaatcgttcggagccaagtatattttccagatagg
cgactgatacagtttgattgtggtaagctgcaggagcttgctatgttattgaggaaatta
aaatttgggggtcacagggcgttgatattcacgcaaatgaccaagatgcttgacatcttg
gaggctttcattaatttatatggttatacctacatgcgtcttgatggttctactcctcca
gaagagaggcagacgttaatgcagcggtttaatacaagtcccaaaatctttcttttcatt
ttgtcaacccgaagtgggggtgttggcatcaatcttgtgggtgcggacacagttatattc
tatgacagtgactggaatcctgctatggaccaacaagctcaagatcggtgccacaggata
ggtcagacacgtgaagtccatatataccggttgataagtgagagcaccattgaggagaat
atcttaaagaaagcaaaccagaagcgtgcgcttgataacctagtaattcaaaacggtgag
tataacaccgaatttttcaagaagcttgatcccattgagttgttctctgggcataaggct
ctgactacaaaggatgaaaaggaaacaagcaagaattgtggggcggaggtacctctgtca
aatgcagatgttgaggctgctttaaaacaggcagaagatgaggcagattatatggctctc
aaaagagtagaacaagaagaagctgtggacaatcaagagtttacagaagaacctgtagag
agaccagaagacgatgagctagtaaatgaagatgacctaaaggctgatgagcctgttgat
caaggtttagttgcatcagggtcgacaaaagaagatattccattgttacatagtgatacc
agggatgagagagctgtcatcactacttcaagccaagaagatgacactgatgtattagat
gatgtcaagcaaatggctgcagcagccgctgctgctggacaagctatctcatcttttgag
aatcagctacgtcctattgatagatatgcgataagatttttagagctttgggaccccatc
attggtgagtctgcaatggaaaatgaagcggggttcgaagagaaagaatgggaacttgac
cacattgaaaagtacaaggacgaaatggaagctgagattgatgatggggaagagcctctt
gtttatgagaaatgggatgctgattttgcaactgaagcatacaggcagcaagtggaagtc
ttagctcaacaccagttgatggaagatttggaaaatgaagctagagagagggaagctgct
gagatggctgaaatggatttgatacagaatgaaactcctcatgtaccaaagtctaagaag
aagaaaaaagcgaagaaagccaaatttaaatccctgaagaaaggatcactggctgccgaa
ccaaaatatctgaagtccgttgtgaaagttgaagattcgactgatgatgataatgaagaa
ttcgcctatgtgagtagcagtgactcagatatggttacaccgctttcgcggatgcatatg
aaaggcaagaaaagagatttaattgttgacaccgaagaagagaatacctcgaagaagaaa
gcaaagaagcataagaaatctcttccgaattcagatatcaaatacaaacaaccaagtgct
ctacatgatgaactggaaccatcaaagccgcctaacagtatggttgttgataatgaaatg
aaactaacgagcaggggtaaaactatagggaaaaaatccatcacttccatgccaataaag
cgtgttcttatgatcaagccagagaagctaaagaaagggaatctgtggtctagagactgt
gttcccttgcctgattcttggctgcctcaggaagatgctatattgtgtgcgatggttcat
gaatatgggcctaattggagttttgttagtggaactctttatggaatgacagctggtggg
gcttacaggggacggtatcgccatcctgcatattgttgtgagagatatagagagcttatc
caacgacatattatgtctgcttccgacagtgcagtgaacgagaagaacctcaacacaggt
tctgggaaggcactcctgaaagtcactgaggaaaatattcggacactcctaaatgttgca
gctgagcagccagatacagagatgctcctacaaaaacatttttcttgcttgctgtcatca
atttggaggacgtcgacccggacagggaatgaacaactgctctccttaagcaatcccatt
ttcaatagacagtttattggctccgtgaatcactcccaggatatagctagaaagccttgg
caggggatgaagatcaccagcttaagtagaaagttgttagaagccgctctccaggattcc
agcacgagtcagccaaacaatactgcttcccgttcgaggttgcaggagaatcaatctatc
aataaagtggagttagacttaaccttggaattccccccacgtggttatgatgattccctg
acgcagtttccacccatgataagtgtgtccattgatgggtcagattcattaaattatgtg
aacgagcccccagtggaagatgttctaaaaggttataggattgctgcagagaaccgttac
aggaatgctgcaaatgcttgtattgaagattcatttggatgggcttcaaacacgttccca
gccaacgatctgaagtccagaacaggcacgaaagcacagtccctggggaaacataagcta
tctgtcgcagactcagccaagtcttcaaaaagcaaacagcgcaaactcttggcagagcaa
acagaagtggcatgggttaggccaaatgacccaaatctcaagtttgatttcacacctgcg
gatagggaggatgaggaggttgaggagaaggcggttttagaagagatagagatgataagt
tgttcacagtggtatgatccattctttacctcaggccttgatgattgctcattagcttct
gaaatctcagaaatagagtag
DBGET
integrated database retrieval system
