Camelina sativa (false flax): 104777072
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Entry
104777072 CDS
T05044
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104777072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104777072
03019 Messenger RNA biogenesis [BR:
csat03019
]
104777072
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104777072
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104777072
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_12
zf-CCCH_4
zf-CCCH_RBM22
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
104777072
NCBI-ProteinID:
XP_010499577
UniProt:
A0ABM0YE42
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All DBs
Position
3:complement(14458470..14459572)
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AA seq
253 aa
AA seq
DB search
MEDADGLSFDFEGGLDSGPVQSSASVPVAPPENSSSAAVHVAPSYDHSAATVAGAGRGRS
FRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQDCVYKHTNEDIKEC
NMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTSYNFGPNRFYQPRNVAPQLQD
KPQGQVPTQGQPQESGNLLQQQQQQQQPQQSQHQVSQTQIPPNPADQTNRSSHPLPQGVN
RFVQSPKVFNWVM
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgcagatggactcagcttcgatttcgaaggtggtcttgattccggacctgtt
cagtcctccgcttcagtcccggttgctccgcctgaaaactcttcctccgccgctgttcac
gtagcaccgagctacgatcactccgccgcgacggttgctggagctgggaggggaagaagt
ttccggcagactgtttgcagacactggcttagaggtctgtgtatgaaaggtgacgcctgt
ggatttctccaccagtttgacaaagctcgtatgccgatctgccggtttttccggttatac
ggtgaatgtcgagagcaggattgtgtgtataagcataccaatgaagacatcaaagaatgc
aatatgtacaagttgggattttgtcccaatggtcctgattgtaggtacaggcatgcaaag
ctacctggacctccaccaccagttgaggaagttcttcagaagatacaacaattgacatca
tacaattttgggccaaataggttctatcaaccacggaatgttgctccacagctacaagat
aaacctcaggggcaagttccgacgcaaggccagccacaagaatcaggtaacttgctgcag
cagcagcaacaacagcaacaacctcagcaatcacaacatcaggtcagccagacacagata
ccaccaaatcctgctgaccaaacaaacagatcatctcatcctttgcctcagggggtaaat
aggtttgttcagagtcccaaggtttttaattgggttatgtaa
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