Camelina sativa (false flax): 104777189
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Entry
104777189 CDS
T05044
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104777189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104777189
Enzymes [BR:
csat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104777189
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104777189
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104777189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
104777189
NCBI-ProteinID:
XP_010499701
UniProt:
A0ABM0YEE7
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Position
3:complement(15372260..15375165)
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AA seq
393 aa
AA seq
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MFSTTLHHLPRPIRSSFTSCRVCRKIVSRRMSTNPAIEPKVRKFESVEGADISSTSQSDG
IRFRLVSYNILAQVYVKSALFPHSPPACLKWKARSHAIHSVLKNLEADFFCLQEVDEYDS
FYRKNMESLGYSGIYIQRTGQRKRDGCAIFYKPSCAELITKERIEYNDLVDSIKADSVTC
SEQKIETSNERKGDDKAKDSRKDSRDLNDPLVRLKRDCVGIMAAFRINKPFQHIVIVANT
HLYWDPELADVKLAQAKYLLSRLAQFRTLISDEFECTPSVLLAGDFNSIPGDKVYSYLIS
GNVKPAETIIEEDAPLPLSSVYEVTRGEPKFTNCTPGFTNTLDYIFFSPSDFTKPVSILQ
LPEPESPDVVGFLPNHHHPSDHLPIGAEFEICQ
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgtttagtactactctgcatcatcttcctcgtccgattcgttcttctttcaccagttgt
cgagtttgcaggaaaattgtatcaagaagaatgagtacgaatccagcaattgaaccaaaa
gttcgcaaattcgaatccgttgaaggagctgatattagttcaacaagtcaatctgatggt
atcagattccgacttgtttcgtataacatcttagctcaggtttatgtgaagagcgccctt
ttcccacactctccacctgcctgtctcaaatggaaagctcgttcacatgcaattcacagc
gtactcaaaaatcttgaggctgatttcttttgtctgcaggaagtagatgagtacgatagc
ttttacagaaaaaacatggagtctctgggttattctgggatttatattcagagaacagga
cagaggaagcgtgatggttgtgcaatcttctacaagccaagctgtgcagagttgatcacc
aaggaacggatcgaatataatgatcttgtggactcaataaaggcagatagtgttacctgc
agcgaacagaagattgagacatccaacgaaagaaaaggtgatgacaaagcgaaagattct
cgaaaagacagtcgtgaccttaatgatccactagtgagactaaaacgcgattgtgttggt
ataatggctgcttttagaatcaacaagccatttcagcacattgttattgtggcaaacaca
catctttactgggaccccgaattggctgatgtcaagcttgctcaagccaagtatctacta
tcacgactagctcagttcagaacgctaatatcagatgaatttgagtgcacaccttcggtg
ttactagctggtgacttcaattcaattcctggggataaggtttatagttacctaatatcg
ggtaatgtaaaacctgcagagaccataatagaagaagacgctccacttcctctgtctagt
gtctatgaagtcacaagaggagagcctaagttcacaaattgcactcctggcttcacaaac
acccttgactacatcttcttctctccttctgacttcaccaaacctgtgagtatcctccaa
ctacctgaaccggaatctccagatgttgtcggtttcttaccgaatcatcatcacccgagt
gatcatttaccaataggagctgagtttgagatttgtcagtga
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