Camelina sativa (false flax): 104777700
Help
Entry
104777700 CDS
T05044
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104777700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104777700
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104777700
mRNA degradation factors
5'-3' decay
Decapping complex
104777700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Beta-prop_TEP1_C
Sec3_CC
Motif
Other DBs
NCBI-GeneID:
104777700
NCBI-ProteinID:
XP_010500304
LinkDB
All DBs
Position
1:5527410..5533379
Genome browser
AA seq
1342 aa
AA seq
DB search
MASSPGNTNPHNPPPFDLSTIFKTSSNPYPAPPSSYPPPAGPFLHSQYNQQLYAPPSTLA
QPSPVTLTQQDVSSSSSATNLLPQRTLSYPTPPLNPQSPRVNHNPGTHILALLNNNNNNN
GGAVANQEPPHQLPVVTHNEIARSFPGGSGPIRVPSCKLPKGRRLVGEHAVYDVDVRLQG
EIQPQLEVTPITKYGSDPQLVVGRQIAVNKVYICYGLKGGNIRVLNIHSALRSLFRGHSQ
RVTDMAFFAEDVDLLASVSLDGKVFAWKISEGSERDDQSQITGKIVCALQILGEQDTKHP
RVCWHCHKQEILVVSIGKHVLRIDTTKVGRGEVFSAEAPLQCPLDKLIDGVQIVGKHDGE
VTDLSMCQWMTTRLVSSSVDGTVKIWQDNKAQPLVVLRPHDGHPVSSATFVTSPERPDHI
ILITGGPLNREMKIWVSAGEEGWLLPADAESWRCTQTLELKSSTEPRAEETFFNQVIALS
EAGLLLLANAKRNALYAVHLDYGYSPVDSRMDYLSEFTVTMPILSFIGTNDFPEEPIVKV
YCVQTLAIQQYTLDLCLCLPPPTENVGFEKSDSSVSREANLVESMFEPSGLKPTKLPSVN
SVPKPSILVNRSESANTLNFPAGSASAETTSPVIVPPNGEPKTSGLPSETSDAGSAYAPS
SQHSLSPRLSSKLSGYHTPSDCFVDRQNDDVGENSLNVSSVDESSRTKDMNVKPDDDMSG
IRSPSAFFKHPIHLVTPSEILMGVSSTEASVTTEDKRDRNADIQDVNNDARGTEVEVKEV
SEARSTQNGEINYHEETANHTSESREQIFCSQASNLTARVRHPITEETVIPEDSVAYGQP
LQVGDERVLDSRDLSANLPKSDSSSGLPQLVATNSKGKKQKAKNSQGPSLSSSNVADLAE
SVSEQCERLSHPMTDSLPQLLAMQETMNQIMVSQKEMQRQLSNAVTGPIVKEGKRLEVAI
GRMIEKSSKSNADALLARFQEEAFKNEKALRDHAQQIVNATSNFMSKELNAMFEKTVKKE
FATVGPSLARAATPVIEKTVSSAIAESFQKGIGDKAVNQLDKSVITKLETTIARQIQAQF
QTSGRQALQEGLRSSLESSVIPSFERACKAMFVQVDSTFQKGMAEHTSAAQQRFDSGHSQ
LAHTLKETISSASSVTQALNHELAESQRNRLALAAAGASSGGSNPLVTQLSNGPLGALLE
KVEAPMDPTAELSRLISERKYEESFTSALQRSDVSIVSWLCSQVDLRGLLAMNPLPLSQG
VLLSLLQQLSCDISKDTSRKLGWMTDVVAAINPSDQMIAVHARPIFEQVYQILHHQRNAP
GSDISAVRLIMHVINSMLMSCK
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttcacccggtaatactaaccctcacaatcctcctccgttcgatctcagtact
atcttcaaaacttcatcgaacccttatccggcgccgccgtcatcttatcctccaccggcg
ggtccttttcttcacagccagtacaatcagcaactctacgcgccgccgagtaccttagcc
caaccatcgccggtgactctgacgcaacaggatgtgtcttcctcttcctccgcgactaac
ttgcttccgcagagaacgctgtcttatcccacgccacctctcaatccccaatctccccgt
gttaatcacaatcccggaacccacatcctcgctctccttaacaacaacaataacaacaac
ggaggcgccgtggctaaccaagagcctccgcatcagcttccggtagtgactcacaacgag
atcgctcggtcttttcctggcggttcgggtcctatccgtgttcccagctgtaagctgcct
aagggaagacggttggttggtgaacacgctgtgtacgatgtggacgtgagattacaggga
gagattcagccgcagttggaggtgactccgattactaaatacgggtcggatcctcagctt
gtagtgggtcggcaaatcgccgtgaataaggtctacatatgctatggattgaaaggagga
aacattagggttcttaatatacacagtgctttgaggtctttgttcagaggccattctcag
agagtgacggacatggctttctttgccgaagatgttgatctcttggctagtgttagtcta
gatggaaaagttttcgcgtggaaaatttctgagggatctgagagagatgatcaatcccag
ataactggaaagatagtttgtgctcttcaaatactaggagagcaagacaccaaacatcca
cgtgtttgttggcattgccacaaacaggaaattttggtagtttctattggtaaacatgtg
ctgcgaattgatactaccaaagttggcagaggtgaagtattctctgctgaggcacctctc
cagtgtccccttgataagctgattgatggtgttcagattgttggcaagcatgatggggaa
gttacagatttgtcaatgtgccaatggatgaccacgcgcctggtttcttcttctgttgat
ggcacggttaagatatggcaagataataaggcacaaccactcgtagttttgaggcctcat
gatggacatccagtcagctcagccacatttgtgacatcccctgaaagacctgatcacatc
atacttatcacggggggtcctctaaatcgagaaatgaaaatctgggtctctgctggtgaa
gaagggtggcttttaccagctgatgctgaatcatggaggtgtacccagacacttgaattg
aaaagttcaactgagccacgggctgaagagacattttttaaccaagtaatagcattatct
gaagcaggcttgcttttacttgcaaacgcaaaaaggaacgccttatatgctgtgcatctg
gactatggttattctcctgttgattcgcggatggattacctgtcagagtttacagtcact
atgcccatattgagttttattgggacaaatgattttccagaagagcccattgttaaggtt
tattgtgttcagactctagcaatccagcagtatacattagacttatgcttgtgcttgcca
cctcctacagagaatgtgggttttgagaagtcagattctagtgtgtcacgggaagcaaat
cttgttgaaagtatgtttgaaccatctggactgaaacctaccaaattaccatcagttaat
tcagtgcctaaaccatctattttagtgaatagatcggaaagtgctaatacgttgaatttt
ccagcgggttctgcatcagcggagaccacatcaccagtaattgttccccccaatggtgag
cctaaaacttctgggctgccttctgagaccagtgatgcaggttctgcgtatgctccttca
tctcaacattctctaagtccaagactatcaagtaaactttctggctatcacactccttct
gattgttttgttgataggcaaaatgatgatgttggagaaaatagtttgaatgtatcttct
gtcgacgaaagctctagaaccaaagacatgaatgttaaacctgatgatgatatgtctggg
attcgaagcccatcagctttcttcaaacaccctattcatctcgtaactccttcagagata
ttgatgggtgtttcatccactgaagcctccgttactactgaagacaagagggatagaaat
gctgatattcaggacgtgaataatgatgcaagaggcacagaagttgaggtcaaagaagta
agtgaagcacggtctacgcagaatggtgaaatcaactatcatgaagaaactgcgaatcac
acttcagaaagtagagaacaaatcttctgctcacaggcttccaatctcacagcaagagtc
cgtcatcctattactgaggaaactgtcattccagaggactctgtggcatatggacagcct
ttacaagttggggatgaaagagttcttgactcaagagatttgtctgcaaaccttcccaag
tcggattcatctagtgggcttccacagttggtagctacaaatagcaaagggaagaagcag
aaggccaaaaattcccagggtcccagtttgtcatcctcaaatgttgctgatctggctgaa
tccgtcagtgagcaatgtgagaggttaagtcatcccatgacagattcgcttcctcagtta
ttagctatgcaagaaacgatgaatcagataatggtttcacagaaggagatgcagagacaa
ctatcaaatgctgtcactggccctattgtaaaagaaggtaaaagacttgaagtggctata
gggagaatgatagagaaatccagcaagtcaaatgctgatgctttattggcccgctttcaa
gaggaggcttttaagaatgaaaaggcattacgtgaccatgcacaacaaattgtgaatgca
acgtcaaacttcatgagcaaggagttaaatgccatgtttgagaaaacggtgaagaaggaa
tttgctaccgttggtccatccctagcacgtgcagcaactccagttattgaaaaaactgtt
tcctctgcaatcgcagaatcctttcagaaaggaattggtgacaaagcagttaatcagctt
gataaatctgttattacaaagcttgaaacaaccatagccaggcaaattcaagcccaattt
cagacgtctggtagacaagccctccaggaaggtcttaggtcaagtctggaatcttcagtc
ataccgtcctttgagagagcatgcaaggccatgtttgtgcaagtagactcaaccttccag
aaagggatggctgagcacacaagtgcagcccagcaacggttcgactctggacactcccag
cttgctcatactctgaaggaaaccattagttctgcatcatcagttactcaagccctaaat
catgaattagccgagagtcaaaggaatcgcttagctctcgcagctgctggagctagttct
ggtggatcaaatcccttggttactcaactaagtaatggacctttaggtgctcttcttgaa
aaggttgaagcgcctatggacccaacagcagaactctcaaggttgatatctgaacgcaag
tacgaagaatctttcacttcggctctacagagaagcgatgtctctatagtgtcatggctt
tgctcacaggtggatcttcgtggactactggctatgaatccgcttccactgagccaaggc
gtgcttctttcactgctgcagcagctatcttgtgacatcagcaaggacacatcccgtaag
ctaggttggatgactgatgttgttgcagccataaacccatcagatcagatgattgcggtc
cacgctcgcccaatctttgaacaggtttatcagattttgcaccaccagcgtaacgcaccg
ggcagcgacatctctgccgtcagacttataatgcacgtgatcaactctatgcttatgagc
tgcaaatga
DBGET
integrated database retrieval system
