Camelina sativa (false flax): 104777789
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Entry
104777789 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104777789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104777789
03012 Translation factors [BR:
csat03012
]
104777789
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104777789
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104777789
Translation factors [BR:
csat03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104777789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
ATPase
nSTAND3
AAA_16
T2SSE
PhoH
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
104777789
NCBI-ProteinID:
XP_010500405
LinkDB
All DBs
Position
3:complement(22971299..22976319)
Genome browser
AA seq
963 aa
AA seq
DB search
MPRPNSNDSLSSDYGKYENPETVMQNSLARERILRPRSLQLRSKQQQWVDSPEGQKMVEF
RKTLPAYKEKDALLKAIAANQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSIICTQ
PRRISAISVSERVAAERGEQIGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLK
GVTHVVVDEIHERGMNEDFLLIVLKDLLPRRPDLKLILMSATLNAELFSSYFGGAPAMHI
PGFTYPVRAHFLEDFLEKTGYRLTAYNQIDDYGEEKTWKMQKQAQFKKRKSPISSAVEDA
LEAADFKGYNFRTRDSLSCWSPDSIGFNLIENVLCHIVKGERPGAVLVFMTGWDDINSLK
NQLEAHSLLGDTNKVLLLACHGSMASSEQRLIFDRPPEGIRKIVLATNMAETSITINDVV
YVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVMPGECYHLYPRCVYDAFA
DYQQPELLRTPLQSLCLQIKSLRLGSISEFLSRALQPPEALSVQNAVEYLKIIGALDDDE
NLTALGKNLSVLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAETA
RSKFSGRDYSDHLTLVRAYNGWKAAERTQSGYEYCWKNFLSSQTLKAMDSMRKQFFNLLK
EASLIDNIEGCSKLSHDDHLVRSIICAGLFPGICSVVNKEKSITLKTMEDGQVLLYSSSV
NGNVPMIPFPWLVFNDKVKVNSVFLRDSTAVSDSVLLLFGDKISSGGFDGHLKMLGGYLE
FFMKPTLAYTYLSLKRELDELIQNKLVNPKLDIQPYDKLMTAIRLLVSEDQCEGRFVYGR
KALSPTPTKKLKEVGTQLQNSGGENNKNQLQTLLARAGHGTPVYKTRQLKNNQFRAMVTF
NGLDFMGKPCGSKKNAEKDAAHEALLWLQGESKSSLNDLNHMSMLLKKNKSKKPARASSA
KWG
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgcctaggccaaatagtaatgatagtttgtcatccgattatggaaaatatgagaaccca
gagacagtgatgcaaaatagtcttgcaagggaaagaatactccgtccaagaagcttacaa
ctgaggagcaagcaacagcaatgggtggattctccagaaggccagaaaatggtagagttt
cgcaaaacccttcctgcttacaaagagaaagatgcactactgaaagccattgcagcaaac
caggtcgtagtggtttctggagaaactggatgtggtaaaacaactcaacttccccagtac
atattagaatctgagatcgaggctgcccgtggagcttcatgcagcatcatatgtacccag
cctagaagaatatctgctatctctgtttctgaacgagttgctgcagaacgtggagaacaa
ataggagaatctgttggctacaaagtgcggcttgaaggaatgagagggagagatacacgt
cttcttttttgtacaactggtgttttacttagaaggttacttgtggatcgtagtctgaag
ggtgtgactcatgttgtagttgatgagattcatgaacgtgggatgaatgaagattttctg
cttatcgtcctgaaagatctcttacctcgtcgacctgacctaaagctaatcttgatgagt
gctactttgaacgccgagctcttttcttcttattttggtggtgcaccagccatgcatatc
ccaggttttacataccctgtccgagcccatttcttggaggatttccttgagaagactggg
tacaggctgacagcatataatcaaattgacgattatggtgaggaaaagacatggaagatg
cagaaacaagctcaattcaaaaaaagaaaatccccgatatcttctgctgttgaggatgct
cttgaagctgcagacttcaaaggatacaactttcgtactagagattctttgtcatgctgg
agtcctgattcaataggctttaacctcattgagaatgtgctttgtcacatcgttaaagga
gagagacctggtgctgttttggtattcatgaccggttgggatgatataaactccttaaag
aatcagctcgaagctcattctcttctaggagatacgaacaaagttttgttgcttgcctgt
catggatccatggccagctctgagcagaggctgatttttgatagacctccagaaggaatt
aggaaaatagtgctggccaccaatatggctgagacaagtatcaccatcaatgatgtcgta
tatgtcattgattgtggtaaagcaaaagagacgtcttatgatgcccttaacaatacccct
tgtctgcttccatcttggatttcgaaggctgctgctcgccaaagaagaggtagagctggt
cgtgttatgcctggagaatgttatcacctctatcctagatgtgtctatgatgcttttgct
gactaccagcagccggaactccttaggacacctttgcagtctttatgtctacaaattaaa
agcttaagacttggaagcatttcagagttcctgtccagggcgttgcaacctcctgaagca
ttatctgtccaaaatgctgttgagtatctaaagatcattggggctcttgatgacgatgaa
aatttaacagctttagggaaaaatctgtctgtgcttccggtggagcctaaactcggaaaa
atgcttattttaggggctatcttcaactgtctagatccagtaatgaccgttgtcgctggt
ctaagtgtcagagacccattccttatgccatttgacaaaaaagatctggcagaaacagca
aggtccaagttctctggccgtgattacagtgatcatttgacactagttcgagcatacaat
ggttggaaagctgctgaaagaacacagtctgggtacgagtactgctggaagaactttctc
tcttctcaaactcttaaggccatggactctatgcggaaacaatttttcaatctcctcaag
gaggcttctctgattgataacatagaaggttgcagtaagctgagtcatgatgatcatctt
gtccgctcaatcatttgtgctggcctgttccctggaatttgttctgttgttaataaggaa
aagtcaatcacgctcaagacaatggaagatggacaagtgcttctatactcaagttctgtg
aatggcaatgtaccaatgattcccttcccttggctagtcttcaacgacaaagtgaaagtc
aattctgtgttcctgcgagactctactgctgtatctgactctgtgcttcttttgtttgga
gataaaatatcttccggtggatttgatggtcatctcaaaatgcttggaggatatctagag
tttttcatgaaacctactttagcatatacatacctatcgttaaaaagagagctcgacgaa
cttattcagaataagcttgtgaatccaaaacttgatattcaaccatacgacaaacttatg
actgccattagattacttgtgtcggaggaccaatgtgagggaagattcgtctatggccgg
aaagctctaagccctacaccgacaaagaagttaaaagaagtagggactcagctgcagaac
agcggtggtgaaaacaacaagaaccaacttcagacattgcttgcccgagcaggacacgga
acacctgtgtacaagacaagacagcttaagaacaaccagttccgcgctatggttaccttc
aacggattggatttcatgggaaagccatgtggtagtaagaaaaatgcggagaaggatgca
gctcatgaggctttgttgtggttacaaggcgagtccaagtcgagtctgaatgatcttaac
cacatgtcaatgctgttaaagaagaacaaaagtaaaaaacccgcaagggcatcatcagct
aaatggggttaa
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