Camelina sativa (false flax): 104778046
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Entry
104778046 CDS
T05044
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 34
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03015
mRNA surveillance pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104778046
09122 Translation
03013 Nucleocytoplasmic transport
104778046
03015 mRNA surveillance pathway
104778046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104778046
03041 Spliceosome [BR:
csat03041
]
104778046
03009 Ribosome biogenesis [BR:
csat03009
]
104778046
03012 Translation factors [BR:
csat03012
]
104778046
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104778046
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104778046
mRNA cycle factors
Stress granule specific factors
104778046
Spliceosome [BR:
csat03041
]
Complex C
Other components
EJC/TREX
104778046
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
90S particles
Helicases
104778046
Translation factors [BR:
csat03012
]
Eukaryotic type
Initiation factors
eIF-4
104778046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Helicase_RecD
AAA_19
AAA_22
AAA_34
CbiA
CMS1
Utp25_C
Motif
Other DBs
NCBI-GeneID:
104778046
NCBI-ProteinID:
XP_010500713
LinkDB
All DBs
Position
3:25290421..25292768
Genome browser
AA seq
402 aa
AA seq
DB search
MVAAKGIDRKSEGALDDENLVFETTKGIKAIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQ
RAFVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNTSSRKVQALVLSPSRELASQTEKTI
QAIGTHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVL
DESDEMLSKGLKDQIYDVYRSLPHDIQVCLISATLPQEILEMQEKFMTDPVRILVKPDEL
TLEGIKQYYVDVDKEEWKFDTLCDLYGRLVINQAIIFCNTRQKVDWLTEKMRSSNFVVSS
MHGDKRQKERDEIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIG
RAGRFGREGVAINFVKSSDKKDLKDIEKHYGTKIREMPADLV
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggtggcagcgaaaggaatagatcggaaaagcgaaggagctttggatgatgagaatctg
gtcttcgaaacgactaaagggatcaaagcaatcaagagtttcgatgacatggggatgaac
gataaagttctccgaggggtttacgactacggttacaagaaaccatctgagattcaacag
agagcttttgtgcctattctcaaaggaagagatgttatagctcaggctcagtctggtact
ggcaaaacctccatgattgctatctccgtctgtcaaatcgtcaacacttcttctagaaag
gttcaggcattggtgttgtctccatcaagagagctggcttcacagacagagaagactata
caggctattgggacgcatactaatattcaggcgcatgcctgcatcggtggtaagagcatt
ggagaagacatcaagaagctggagcgtggtgtccatgctgtgtctgggacacctggtcga
gtctatgatatgataaagagaggaagtttacagactaaagctgttaaacttttggttctt
gatgaatcagatgaaatgttgagtaaaggtttgaaagaccagatttacgacgtttacaga
tctcttccacatgatattcaggtttgcttgatttctgctactcttcctcaagagattttg
gagatgcaagaaaagtttatgacagatcctgttaggatacttgtgaaacctgatgaattg
actctggaaggaatcaaacaatactatgttgatgttgataaagaagagtggaagttcgat
actctttgcgatctttatggaaggcttgttattaatcaggctattatcttctgcaacaca
agacaaaaggtggattggcttactgagaagatgaggagtagcaatttcgtagtttcatca
atgcatggagacaaacgtcaaaaggagagagatgaaatcatgaaccagtttcggtcattt
aaaagccgcgttttaattgcctcagatgtatgggcacgagggatcgatgttcaaacagtt
tcacatgtcatcaattatgatatacccaacaacccggagctttacattcatcgtattgga
cgagctggtcgttttggtcgtgaaggtgtggccattaactttgtgaaatcttcggacaag
aaggatctcaaggatattgagaagcattacggtactaaaatccgcgagatgccagctgat
cttgtctaa
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