Camelina sativa (false flax): 104778380
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Entry
104778380 CDS
T05044
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104778380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104778380
03009 Ribosome biogenesis [BR:
csat03009
]
104778380
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104778380
Spliceosome [BR:
csat03041
]
Complex A
U1 snRNP components
U1 related factors
104778380
Complex B
104778380
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
Pre-60S particles
Helicases
104778380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
104778380
NCBI-ProteinID:
XP_010501121
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All DBs
Position
3:27718545..27721470
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AA seq
502 aa
AA seq
DB search
MSRYDSRTGDSTSYRDRRSDSGFGGASSYGSSRSHTSSMKKDSDGNDSPRKLDLDGLTPF
EKNFYVESQAVASMTEAEVEEYRKLREITVEGRDIPKPVKSFRDVGFPDYVLEEIMKAGF
TEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPILAPGDGPIVLVLA
PTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMES
NNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFL
YNPYKVIIGSSDLKANRAIRQIVDVITESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQ
ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINY
DFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELINILEEAGQKVSPELASMGR
STAPAPPGLGGFRDRGSRRGWS
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctacgatagccggaccggcgattccacctcttaccgtgaccgtcgaagtgac
tcagggtttggtggggcttcatcatacggaagctcacgtagtcatacatcaagcatgaaa
aaggatagtgatggcaatgactctccaaggaagctagatttggatggtttgactcctttc
gagaagaatttctatgtcgaatcgcaggctgtggcgtctatgactgaggcagaagttgaa
gagtatcgtaagctgagggaaatcactgttgaaggccgagatattcccaaacctgtcaag
agttttcgtgatgttggctttcctgattatgttttggaagagattatgaaggctggtttc
actgaacctacgcctatacaatcccagggctggccaatggcaatgaagggacgtgatctt
attggcattgctgaaactggctctggaaagactctttcctacttactacctgcaattgtc
catgtcaatgcccaaccaattttagctcctggggacggcccaatcgtcttggttcttgct
ccaacacgtgaactggctgtgcagattcagcaagaggcatctaaatttggttcatcctct
aaaattaagactacttgtatttatggtggagttccaaaagggcctcaagtgcgtgatctc
cagaaaggtgttgaaatcgttatagctactcccgggaggttaatagacatgatggagtcg
aacaacacaaacctgcgaagggttacttatcttgttttggatgaggctgatcgaatgctg
gatatggggtttgaccctcagattcggaaaattgtttcacatattcggccagaccgtcaa
actttgtactggagtgctacttggcctaaggaggtggaacaactatccaagaagtttctt
tataacccatacaaagtgataataggatcttctgatttaaaagctaaccgtgcaatccgt
caaattgttgatgtcattacagaaagccaaaagtataacaaattggtgaagttgcttgaa
gacataatggatggaagcagaattctcgtcttcctcgacacaaaaaagggctgtgaccaa
atcactcgtcagcttcgcatggatggttggcctgctttgtcaatacatggtgataaaagc
caagctgagagagattgggttctctcggagtttaaatcaggcaaaagccctataatgact
gctacagatgtggcagctcgcggattagacgtgaaagatgtgaagtatgtgataaactat
gacttccctggatcactggaggattatgttcacaggattggaagaacgggtagagcgggg
gctaaaggaacagcttacactttcttcacagtagcaaatgcgagattcgccaaggaactt
atcaacatactagaagaagctggacagaaagtaagccctgaattggcttcaatgggtcgc
agcactgcccctgctcctccagggcttgggggattcagagaccgtgggagcagaagaggg
tggagctga
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