Camelina sativa (false flax): 104778816
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Entry
104778816 CDS
T05044
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SWI3C-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
csat
Camelina sativa (false flax)
Pathway
csat03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104778816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104778816
03036 Chromosome and associated proteins [BR:
csat03036
]
104778816
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
104778816
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
104778816
PBAF complex
104778816
GBAF(ncBAF) complex
104778816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
Myb_DNA-binding
SWIRM
Myb_DNA-bind_6
DUF7685
SANT_DAMP1_like
Motif
Other DBs
NCBI-GeneID:
104778816
NCBI-ProteinID:
XP_019099134
LinkDB
All DBs
Position
3:complement(9904462..9909529)
Genome browser
AA seq
742 aa
AA seq
DB search
MPASEDRRGKWKRRKRGGLSAARKPKQEEEDIEEEDEENNNNHNNEEVDDVDNNADELHQ
NGGATPDPGHGIGEVVEDSGSRISDFPSVVKRVVIRPHASVTAVVAAERGGLIGETRGQG
SLPSLENISYGQLQALSTVPADALSFDLERSDGASSAYVISPPPILEGEGVAKRFGDLVH
VLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIVSKYMQNPEHVPSAA
LTSIDSLIKFDKPNCRHKGAEVYSSLSSLDGDIPDLDIRIREHLCDNHCNHCSRPLPTVY
FQSQKKGDIVLCSDCFHHGRFVVGHSCLDFVRVDPSKFYGDQDGDNWSDQETLLLLEAVE
LYNENWIQIADHVGSKSKAQCILHFLRLPVEDGLLDNVEVPGVTNSENPANGYDHKGTDS
DGDIPGYSEQDSDTEIKLPFVKSPNPVMALVAFLASAVGPRVAASCAHESLAILSEDDRM
KSEGVQGKEAGENQQQDENSGAAKTSLQNGAEPQTPLPEDKVMLAFRAGLSAAATKAKLF
ADHEEREIQRLSANIVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFAAERVRMLS
ARFGSPGGIPPQTNNNLQGMSLSTGSNNINTLLQQQQQVSATTQPSIIPGFSNNPQVHAQ
MQFMARQQQQQQQAFSFGPRLPLNAIQTNAGSTASPNVMFGNNQLNNPAGAGGAASINQP
SFSHPMVRSSTGSGSGSGLGLN
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttctgaagatagaagagggaaatggaaacgacggaagcgaggtgggttatcg
gcggcgaggaaaccgaaacaagaggaggaagatatcgaggaagaagacgaagagaacaac
aacaatcacaacaacgaagaagttgatgacgttgataataatgccgatgagcttcaccag
aacggcggcgcaactcccgatccgggacacggtattggcgaagttgttgaagattccggt
tcgcgcatctctgatttcccctcggtggttaagcgtgttgtgatccgtccgcacgcgtct
gtaacggctgttgttgctgctgagagaggtggtttgattggggagactagaggtcaaggt
tcgcttccgtctctggagaatatttcgtatgggcaattgcaagcgttgtctactgtaccg
gctgatgctctgtcctttgatctcgagaggagtgatggagcgtcttcggcttatgttatc
tctccaccacctattttggaaggagaaggagttgctaaacggtttggggatctggttcat
gtcttgcctatgcattcagattggtttgcaccaaacacagtggatcggcttgaaaggcaa
gtggtgccacaattcttctctggaaaatcgccaaatcatacacccgaaagttatatggaa
ttcaggaacgcaattgtgtcaaaatatatgcagaaccctgaacacgtgccgtctgctgct
ttaacatctattgatagtttgatcaaatttgacaagcccaactgtagacacaagggggct
gaagtgtattcatccttgtcaagcttggatggtgacatccctgacttggacatcagaatt
cgtgaacacctttgtgataatcattgcaaccattgttctcgaccgcttccaactgtgtac
ttccaatcgcaaaagaagggggatatagtcttatgttctgattgttttcaccatggaaga
tttgttgttggacattcttgtcttgactttgtaagagtggatccatccaaattttatggc
gatcaagatggagacaattggagtgatcaggaaactctcttacttcttgaagctgtggaa
ctctacaatgaaaattggattcagattgcagatcatgttggttccaaatcaaaagctcag
tgcattcttcattttcttcgattacctgtggaggatggtcttttggataatgttgaggtt
ccaggtgtaactaattcggaaaaccctgcaaatggatatgaccacaaaggaacagattca
gatggagatatacccggatattcggagcaagattctgacacggagatcaagcttcctttt
gtgaagtctccgaatccggttatggcattggttgcatttttggcatcagctgttggacct
cgagttgctgcgtcatgtgcccatgagtcccttgcgattttatctgaggatgataggatg
aaatctgagggtgtgcaagggaaagaagctggagaaaatcagcagcaagatgaaaactca
ggagcagctaaaacatcgctccaaaacggagcagaaccacagactccactgccagaggat
aaggttatgttagcatttagagccggtctatcagctgcagcaacgaaagcaaaattgttt
gccgatcatgaagaacgtgagatccaaaggctttctgcaaatattgtaaatcaccagctg
aagaggatggagctgaagctaaagcagtttgcagaaattgaaacattgttgatgaaagaa
tgcgaacaagtagagaaaacacgtcagagatttgctgcagaacgagtccgtatgctctca
gcaagatttggatcacctggaggaatccctccacagactaataataatctccaagggatg
tctctgtccacaggtagtaacaacatcaatactctcttgcagcagcaacaacaagtttca
gcaacaactcagccaagcatcatcccgggattcagcaacaacccgcaagtccatgcgcag
atgcagttcatggcacgccaacaacaacagcaacaacaagctttctcgtttggcccgaga
ttgcctctcaatgcgatacagacgaatgcaggatcaacggcttcaccaaatgtcatgttt
ggcaacaaccaacttaataaccctgcaggtgcaggaggagcagcatccatcaaccaaccc
tcgtttagtcacccgatggttaggtcttccacgggttcaggctcagggtccggtttaggc
ttaaactga
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