Camelina sativa (false flax): 104778909
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Entry
104778909 CDS
T05044
Name
(RefSeq) putative CCR4-associated factor 1 homolog 3
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104778909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104778909
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104778909
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104778909
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
104778909
NCBI-ProteinID:
XP_010501622
UniProt:
A0ABM0YIW9
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Position
3:complement(12864534..12865680)
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AA seq
289 aa
AA seq
DB search
MKQSRGGEVWRWNKEVEMDAISDCLRKSCFIAVDTEFPGCLLETPVEASEETRYRDMRYN
VGNTNLIQLGFTLLDGNGDTRGTWEVNFSDFDVSVDAYNEKSIAFLRSNGLNLDKIREEG
IGIDEFFGEFAQILKTKRMSWVTFQGSYDKAYLVKGLTGGEPLPKTKQGFEVAVETLLGD
VFDVKKIAELCSGISSHYGLQKIADALQMRRVGIAHHAGSDSELTARIFTTMACGLHDYE
KRKQQYQDDLMMATSYVPQLPPIPMPMEYDAYPSFGGYFSGAGHGMNYV
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaagtcgtggtggtgaagtttggagatggaacaaggaagtagagatggatgcc
ataagcgattgtttgagaaagagttgtttcatcgctgtagatacagagtttcccggatgc
ttgttggagactcctgtagaagcgagcgaggaaacccggtacagagacatgaggtataac
gtcggcaataccaatctcattcaattaggttttacgttgttggacggtaacggagatacc
cgtggaacatgggaagttaatttctctgatttcgacgtatcagttgacgcttacaacgag
aaatctatcgcgtttctgagaagtaatggcctcaatcttgacaagatacgcgaggaagga
atcgggattgacgagttcttcggagagtttgctcagattcttaagacgaaaaggatgagt
tgggttacttttcaaggctcatacgacaaggcttatctagtgaaaggcttaaccggagga
gaaccgttgcctaagactaaacaaggttttgaggtggctgtggagacgcttctgggagat
gtttttgacgtcaagaaaatagctgagttatgcagcgggataagtagccattacggacta
cagaagatagcagatgcgttacagatgaggcgtgtcggaatagctcatcacgctggttct
gacagcgaactcacggctcgtatcttcaccacgatggcttgcggtttgcatgattacgaa
aagagaaagcagcaataccaagatgaccttatgatggctacaagttatgtaccacagctg
ccacccatacccatgcccatggagtatgatgcttacccatcttttggtggttacttcagt
ggtgccggccatggaatgaactatgtatga
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