Camelina sativa (false flax): 104779707
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Entry
104779707 CDS
T05044
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104779707
09123 Folding, sorting and degradation
03018 RNA degradation
104779707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104779707
03041 Spliceosome [BR:
csat03041
]
104779707
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104779707
mRNA degradation factors
5'-3' decay
Lsm complex
104779707
Spliceosome [BR:
csat03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
104779707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
104779707
NCBI-ProteinID:
XP_010502407
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Position
4:3508079..3509741
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFGQPEAV
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaaggaaagaaacggttttggatttggctaagtttgttgataagggtgtgcaa
gttaagcttactggtggtagacaagtcactggaactcttaaaggctacgatcaattgctc
aatcttgttcttgatgaagcagtagaattcgttagagaccacgatgatcctttgaagact
accgaccagacaagacgccttggtttaattgtttgccgtggaacagcggtcatgctcgtc
tcaccaaccgatggcactgaagaaatcgctaacccatttggtcaaccagaagctgtttaa
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